Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05877 ATGTCATCACCGAGTTATGCCCACGCGCACACGCCGCTCATTCGCCCCCGTCGCGTGGGCCGCACGCCAGTCCTCGCTCTCCTTCTCGGACGCAGAGGTCCTTCCGTTCTTGTCCGTGAAACAGCGGCGCGTGAGCTTGAGGAGCGGCGCGCTGATTGGGGTTACTCGAAGCCGGTAGTATTGCTTGACATCGCGTGGAACACAGCTTTCGTGGTGGTCGCGGCGGTTATGTTAGGTTATACCGTTGACGAGAATCCTAACACTCCGATTCGGTTGTGGATCTGTGGTTATGCGGTGCAGTGTCTGGTTCACGTGGCGTTGGTGTGGTTGGAGTACAGGAGGAGGAATGGAGTTGGAGGACTCGGAAGGGACGAGGAAGCTTTTGATGAAGATGTCAATGATAGTGAGGATGATGATGGTGATGTTGAATTTCGGAATTCTTCTCGCTCCGGATTTGTGAAACGATGTGCGTCGTTGAATACCATGCTTTCATTGGTTTGGTGGATGGTGGGCTTTTACTGGGTTGTGTATGGTGGTGATGTTCTAATGCAAGACGCCCCACGGTTGTACTGGTTGGCCGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGCTTTGGCATGTTTAATTGGCATTGCCCTCTGCTGTTGTTTACCCTGTATTATTGGCATTCTGTATGCTGTTGCAGGACAGGAGGGTGCATCTGAATCAGATCTCAGTATACTTCCAAAATACCGGTTTCAGGTGGTAAGCAATGAAGAAACACCTGATCCAAGAGGTGGATCAATGGTTCCCATTGAAAATAGCAGTGGTGCAAATGAACGAGTACTTTCACCCGAAGATGCGGAATGCTGTATATGCATCTCTCCCTATGAGGATGGAGCAGAACTTCATGCTCTTCCTTGTAACCACCATTTCCACTCCACATGCATAGTGAAATGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAATACAATATTCTTAAGGGAAATGAACAGGTGTGA 1020 0.4892 MSSPSYAHAHTPLIRPRRVGRTPVLALLLGRRGPSVLVRETAARELEERRADWGYSKPVVLLDIAWNTAFVVVAAVMLGYTVDENPNTPIRLWICGYAVQCLVHVALVWLEYRRRNGVGGLGRDEEAFDEDVNDSEDDDGDVEFRNSSRSGFVKRCASLNTMLSLVWWMVGFYWVVYGGDVLMQDAPRLYWLAVVFLAFDVFFAIFCVALACLIGIALCCCLPCIIGILYAVAGQEGASESDLSILPKYRFQVVSNEETPDPRGGSMVPIENSSGANERVLSPEDAECCICISPYEDGAELHALPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05877 339 FunFam E3 ubiquitin protein ligase RIE1 268 336 - -
Trre7g05877 339 CDD RING-H2_PA-TM-RING 287 329 - -
Trre7g05877 339 ProSiteProfiles Zinc finger RING-type profile. 288 329 IPR001841 -
Trre7g05877 339 SUPERFAMILY RING/U-box 278 333 - -
Trre7g05877 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 334 IPR013083 -
Trre7g05877 339 PANTHER TARGET OF ERK KINASE MPK-1 30 337 - -
Trre7g05877 339 SMART ring_2 288 328 IPR001841 -
Trre7g05877 339 Pfam Ring finger domain 287 329 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05877 Trre-Chr7 63451337 63455338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05877 3 338 C3H Transcription Factor Family AT1G68070 67.151 2.93e-168 470
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05877 7 63451337 63455338 Trre7g05877 7 63451337 63455338 ECH