Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05876 ATGTCGTGGGAAGACGAGATTGTGATTCGTGATGTCACTAATGCCGGTCTTGTTGTCAGTGATCGTATTGGCCGTGAAGTTTCCTCTCAGCTTGACCTCGAAGAATCTCTAGAAGCTTCTAGATATGCTAGTCATCCTTATTCTACTCACCCTAGAGAGTGGCCTCCTTTAGTTGAGGTAGCCAATACTTGGGAGTTGCCTCCTGTTCTTATTGAAAGATACAACGCGGCTGGAGGGGAAGGGACTGCATTTTGTGGAATATTTCCTGAAATACGTAGAGCATGGGCGTCCGTGGACAATTCTTTGTTTCTATGGCGTTTTGATAAGTGGGATGGCCAGTGTCCCGAATATAGTGGGGAGGAACAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAGCCTGGTGTTTTCGTTGAAGCTATCCAATATCTTTTAATCTTAGCAACCCCTGTTGAGTTAATTTTAGTTGGAGTGTGCTGCTCTGGAGGAGCAGATGGCTCAGATCCATTTGCAGAAGTTTCATTACAGCCATTGCCAGATTATACAATACCATCTGATGGGGTTACGATGACATGTGTAGCATGTACCGATAAGGGCCGCATTTTCTTTGCTGGTCGTGATGGCCACATATATGAACTTCTTTATTCAACTGGCTCAGGATGGCAAAAGCGCTGCAGAAAAGTATGTGTCACTGCTGGTCTAGGAAGTGTAATTTCAAGATGGGTCATACCAAATGTATTCAATTTTGGAACTGTTGACCCTGTTGTTGAAATGGTTTTTGACAATGAGAGACAGATATTGTATGCACGGACTGAAGAGATGAAGCTTCAGGTTTATGTTCTTGGACCAATTGGTGACGGGCCATTAAAGAAAGTTGCTGAAGAAAGGAATCTTGTCAATCAGAAAGATGGACATCATGGAGGTAGACAGTCAAGTGGTTCAAGAGCATCAAGTCGATCACCGAAGCCATCTATTGTTTGCATCTCACCCTTATCTACACTTGAATCCAAATGGCTACATCTTGTTGCTGTTTTGTCAGATGGCAGAAGGATGTACCTATCCACCTCTCCTTCTAGCGGAAGCCTGAATGGGTTCAACACCAACCATCATAAGCCTAGCTGTTTAAAAGTTGTCACAACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGCGGTCTCACGTTTGGAACCATGGCTCTTGCTGGCAGACCTCAAAATGAGGATCTCTCACTGAAAGTCGAGGCGGCCTATTATTCAGCTGGAACTCTTATCCTTTCTGATGCATCACCTCCAACTATGCCTTCACTCCTTGTTTTAAACAGGGATTCAAGCACGCAGTCATCATCATCGGGTAATCTAGGGACAGGTACAAGGAGTTCGCGGGCATTACGGGAATCAGTATCTTCTTTACCAGTTGAAGGACGCATGCTTTCTGTGGCCGATGTTTTACCTCTACCAGAGACTTCAGCTACAGTGCAGTCTCTTTATTCAGAAATTGAGTTTGGTGGTTATGAGAGCTCGATAGAATCGTGTGAAAGGGCGTCTGGCAAACTGTGGGCAAGGGGAGATCTCTCAACCCAACATATATTGCCAAGGAGGAGGATTGTCATCTTCAGCACCATGGGTATGATGGAAATTGTTTTTAACAGGCCACTAGACATTTTAAGGCGGCTATTAGAGTCCAATTCTCCGAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCCGGTGAGGCAGCTGCCATGTGTTTAATGCTTGCTGCGAGGATAGTACATTCTGAAAACTTTATCAGCAATGTTATTGCTGAGAAAGCTGCTGAAGCTTTTGAGGACCCAAGACTTGTTGGCATGCCACAACTTGAAGGCAGTAATGCATTATCAAACACAAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCTGAGCCTGTTTTTTCAGGTGCGCATGAAGGGCTCTGTTTGTGTTCATCTAGATTACTCTTTCCTCTATGGGAGCTACCTGTAATGGTTATAAAAGGAAGTTTAGGTGATTCAGGCACTTCATTGGAAAATGGGGTAGTTGTATGCAGACTATCCATTGGGGCTATGCAAGTCCTTGAACACAAACTTCGATCTTTAGAGAAATTCTTAAGATCTAGAAGGAACCAGAGAAGGGGACTTTATGGCTGTGTAGCAGGTTTAGGAGATGTAAGTGGTTCCATTCTATATGGTAGTGGTTCTGCATTGGGTGCCGGTGACCGAAGTATGGTAAGAAACTTGTTTGGTGCATATTCCAGAAATATGGAGTCCAATGGTGGTGGAGCCGCAAATAAAAGGCAAAGGTTGCCATATAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTGCTCCTTAGATCTGGCGAAGCTCTATTTTTGCTCCAACTTCTCTCACAGCATCATGTCACTCGCTTGATTCAAGGATTTGATGCTAACCTTCAACAGGCCTTAGTTCAGTTAACATTTCATCAACTAGTTTGTTCAGATGAGGGTGACCGTCTTGCTACCAGGCTTATATCTGCTCTGATGGAGTATTACACTGGCACAGATGGCAGGGGAACTGTAGATGACATTAGTAAGAGATTAAGAGAGGGTTGTCCGAGCTACTATAAGGAGTCTGATTACAAATTCTTCTTAGCCGTGGAAGCCCTGGAGAGAGCTGCTGTGACTATAGATGATGAGGAAAAGGAGACTCTTGCACGGGAGGCATTGAATTCCTTAAGCAAAGTTCCAGAGTCTGCAGACTTACGTACTGTTTGCAAACGTTTTGAGGATTTAAGGTTTTATGAAGCTGTAGTGTGCTTACCTCTACAGAAGGCACAGGCTATCGACCCTGCAGGCGATGCTTATAATGATGAAATTGATGCAACAGTCAGAGAACAAGCACTTGCTCAGCGTGAACAGTGTTATGAGATAATTATCAGTGCTTTGCGGTCTCTTAAAGGTGACACCTTGCGGAAGGAATTTGGCTCTCCCATTAAATCTGCTTCCCAATCTGCACTTGATCCAGCCTCTCGGAAAAAGTATATAAGCCAAATCGTTCAGCTGGGTGTCCAATCACCTGACAGAATTTTCCATGAGTATCTTTACCAAGCTATGATCGATTTAGGTCTTGAGAATGAATTGTTAGAGTATGGAGGCCCTGACCTGTTGTCATTTTTACAAAGTGCTGGTCGTAAACCCATACATGAGGTTCGTGCTGTGACTGCAACAACTTCTCCAATGGGCCAATCAGGAGCACCTATGTCGCCTAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTCCTGAAGCGGCAACATATGCTTGCTGCTCATGCATTGCTACGATTAGCTGGAAGGCCTTCTACTGACGGAGTACCTACTCTTGAGCAGAGGTGTCAATACCTTAGCAATGGAGTTTTACAAGCAAAGAATGCAAATAATAGTGATGGGTTGGTTGGTTCTACTCAGAGTTCCAGTGACACTGGATTACTAGATATGCTTGAAGGGAAGCTTGCTGTTCTTCGGTTTCAGATAAAAATCAAAGAGGAACTAGAGGCTATGGCTTCCAGTTCTGAGGTTTTACACAGCACATCCAATTCTGTTGAAAATGGTTTAGTCCCTGAAGCCAGTTCAACTGTTGATGCCAATTTCGCAAATGCAGCACGGGAGAAAGCCAATGAGCTATCATCAGATTTGAAGAGCATAACACAGTTATATAATGAATATGCTGTTCCCTTTAAGCTCTGGGAGACATGCCTGGAGATGCTGTACTTTGCCAATTATTCTGGTGATAGTGACAGTAGCATTGTCAGAGAGACATGGGCTAGACTTATAGATCAAGCTATTTCAAGAGGTGGCATTGCTGAAGCTTGCTCGGTGCTAAAGAGAGTTGGGCCCCGCCTCTATCCGGGTGATGGAACTGTTCTACAGCTTGACATTATTTGTCTTCACCTGGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGAGTTGAATCTGTTGGAGATGAGGATGTTGCGAGATCCCTTGTTTCTGCTTGTAAGGGTGCAGCAGAACCTGTATTGAATGCATATGATCAATTGTTATCAAATGGAGCAATTTTGCCTTCCCCAAATCTTAGATTGCGGATGCTGAGATCAGTTCTAGTGGTACTTCGTGAGTGGGCTATGTCTATATATTCACACAGGATGGGAACAGGTGCCCCCGGATCTTCCCTAGTACTAGGCGGAGGATTCTCATTGGAACGTACAGTTGCTAGCCAAGGAATTCGGGACAAGATCACAAGTGTGGCAAACAGGTATATGACTGAAGTACGGAGGTTAGCACTTCCACAGAGTCAAACGGAAGCAGTTTACCGAGGCTTTAAAGAGCTTGAAGAGTCGCTCATAAGTCCTCGTTCATTCAATCGATTTTGA 4455 0.4442 MSWEDEIVIRDVTNAGLVVSDRIGREVSSQLDLEESLEASRYASHPYSTHPREWPPLVEVANTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLILATPVELILVGVCCSGGADGSDPFAEVSLQPLPDYTIPSDGVTMTCVACTDKGRIFFAGRDGHIYELLYSTGSGWQKRCRKVCVTAGLGSVISRWVIPNVFNFGTVDPVVEMVFDNERQILYARTEEMKLQVYVLGPIGDGPLKKVAEERNLVNQKDGHHGGRQSSGSRASSRSPKPSIVCISPLSTLESKWLHLVAVLSDGRRMYLSTSPSSGSLNGFNTNHHKPSCLKVVTTRPAPPWGVSGGLTFGTMALAGRPQNEDLSLKVEAAYYSAGTLILSDASPPTMPSLLVLNRDSSTQSSSSGNLGTGTRSSRALRESVSSLPVEGRMLSVADVLPLPETSATVQSLYSEIEFGGYESSIESCERASGKLWARGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENFISNVIAEKAAEAFEDPRLVGMPQLEGSNALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVIKGSLGDSGTSLENGVVVCRLSIGAMQVLEHKLRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGSGSALGAGDRSMVRNLFGAYSRNMESNGGGAANKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDANLQQALVQLTFHQLVCSDEGDRLATRLISALMEYYTGTDGRGTVDDISKRLREGCPSYYKESDYKFFLAVEALERAAVTIDDEEKETLAREALNSLSKVPESADLRTVCKRFEDLRFYEAVVCLPLQKAQAIDPAGDAYNDEIDATVREQALAQREQCYEIIISALRSLKGDTLRKEFGSPIKSASQSALDPASRKKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLSFLQSAGRKPIHEVRAVTATTSPMGQSGAPMSPNQVKYYELLARYYVLKRQHMLAAHALLRLAGRPSTDGVPTLEQRCQYLSNGVLQAKNANNSDGLVGSTQSSSDTGLLDMLEGKLAVLRFQIKIKEELEAMASSSEVLHSTSNSVENGLVPEASSTVDANFANAAREKANELSSDLKSITQLYNEYAVPFKLWETCLEMLYFANYSGDSDSSIVRETWARLIDQAISRGGIAEACSVLKRVGPRLYPGDGTVLQLDIICLHLEKAGLERLNSGVESVGDEDVARSLVSACKGAAEPVLNAYDQLLSNGAILPSPNLRLRMLRSVLVVLREWAMSIYSHRMGTGAPGSSLVLGGGFSLERTVASQGIRDKITSVANRYMTEVRRLALPQSQTEAVYRGFKELEESLISPRSFNRF 1484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05876 1484 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 12 1477 IPR004870 GO:0005643|GO:0006913|GO:0017056
Trre7g05876 1484 MobiDBLite consensus disorder prediction 304 323 - -
Trre7g05876 1484 MobiDBLite consensus disorder prediction 434 466 - -
Trre7g05876 1484 FunFam Nuclear pore complex protein NUP155 1056 1153 - -
Trre7g05876 1484 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 872 1291 IPR007187 -
Trre7g05876 1484 Gene3D - 1179 1460 IPR042538 -
Trre7g05876 1484 Gene3D - 531 883 - -
Trre7g05876 1484 FunFam Nuclear pore complex protein NUP155 1179 1414 - -
Trre7g05876 1484 MobiDBLite consensus disorder prediction 435 465 - -
Trre7g05876 1484 FunFam Nuclear pore complex protein NUP155 894 1053 - -
Trre7g05876 1484 Coils Coil 1232 1252 - -
Trre7g05876 1484 Gene3D Nucleoporin, helical domain, central subdomain 1056 1153 IPR042537 -
Trre7g05876 1484 Gene3D - 894 1053 IPR042533 -
Trre7g05876 1484 MobiDBLite consensus disorder prediction 299 323 - -
Trre7g05876 1484 Pfam Nup133 N terminal like 54 543 IPR014908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05876 Trre-Chr7 63433743 63447864 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05876 7 63433743 63447864 Trre7g05876 7 63433743 63447864 ECH