Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05874 ATGGTTGGATCTGGAGACCTTGATGGATTGAAGAAACTGTTAGATAAGCTCAAAAACGAAGATGATGATAATAGTAATAATGGGTCATCATCTTCTTCATCACCTATGTCTTTTTCTGATGTTATGTCTCTTCAAAACGATCATGGTGAAACACCACTTTACATAGCAGCAAACCATAATCTGAAGGAAGTTTTCACTTTTTTGCTCAAATTATGTGATTTTGAGATTCTCAAGATTCGTTCCAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATTTGGATATTGTGAAGGAGATTTTGAGTGCCTGTCCGGAGGTTTGTAAATTGTGCGACTCGTCGAACACCAGCCCTTTATATTCTGCTGCAGTTCAAGACCATTTGGATGTAGTAAGTGCTATTTTGGATGTTGATGTCAGTTCCATGTTTATAGTTAGGAAAAATGGAAAAACTGCACTACACAATGCTGTTAGGTATGGCGTTCTTCGCATTGTGAAAGCACTTATCTCGCGCGATCAAGGAATAGTTTGTATAAAAGATAAAAAAGGTCAAACTGCACTTCATATGGCTGTTAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACAATATTGAATGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGAGGAAAGGCCGATCGCAGATAGTGAGCCTTTTGCTAAGCTACTCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTTCCATACGGATCTTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGCAAAGTTGATGAAGCCATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAGGTGCAGTCACAACTTATACAAAATGAAAAAACTCGCCGACGAGTTTCTGGTATAGCTAAGGAATTGAAGAAACTTCACAGAGAGGCCGTTCAAAACACCATTAACTCTGTCACAGTTGTTGCTGTCCTTTTCGCCTCGATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGGAAGGACCGCAGGCAGGAAAATCTAACATAGCTGATCATGTTGGATTCCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTTGCTTGGGACACAAGGGCTCAAAGACAGATTGTGTCGGTCGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACATGTGGCGCTTTTCTCGCTATAGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTGGGAATACCAATTTTAGTTGGGACTCTAGCAAGTATGTGTTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCCCAGAGACGTATCAAGAGAGCGAGTGGAAGCAAATCTTTCTCGTGGTCTTACTCTGCAAATATATCAGATTTGGACGAATACAATTCGGATATTGAGAAGATCTATGCCCTGTAA 1575 0.3981 MVGSGDLDGLKKLLDKLKNEDDDNSNNGSSSSSSPMSFSDVMSLQNDHGETPLYIAANHNLKEVFTFLLKLCDFEILKIRSKSDMNAFHVAAKRGHLDIVKEILSACPEVCKLCDSSNTSPLYSAAVQDHLDVVSAILDVDVSSMFIVRKNGKTALHNAVRYGVLRIVKALISRDQGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSLLLSYSAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYIMEGPQAGKSNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05874 524 Pfam Ankyrin repeats (3 copies) 183 249 IPR002110 GO:0005515
Trre7g05874 524 Pfam Ankyrin repeats (3 copies) 53 139 IPR002110 GO:0005515
Trre7g05874 524 Pfam Domain of unknown function 335 442 IPR026961 -
Trre7g05874 524 ProSiteProfiles Ankyrin repeat profile. 151 174 IPR002110 GO:0005515
Trre7g05874 524 Coils Coil 315 335 - -
Trre7g05874 524 Gene3D - 144 300 IPR036770 -
Trre7g05874 524 Pfam Ankyrin repeat 151 181 IPR002110 GO:0005515
Trre7g05874 524 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 4 503 - -
Trre7g05874 524 Coils Coil 7 27 - -
Trre7g05874 524 MobiDBLite consensus disorder prediction 24 41 - -
Trre7g05874 524 MobiDBLite consensus disorder prediction 18 41 - -
Trre7g05874 524 ProSiteProfiles Ankyrin repeat region circular profile. 151 174 - -
Trre7g05874 524 Gene3D - 2 143 IPR036770 -
Trre7g05874 524 ProSiteProfiles Ankyrin repeat profile. 219 244 IPR002110 GO:0005515
Trre7g05874 524 SMART ANK_2a 117 147 IPR002110 GO:0005515
Trre7g05874 524 SMART ANK_2a 151 180 IPR002110 GO:0005515
Trre7g05874 524 SMART ANK_2a 83 112 IPR002110 GO:0005515
Trre7g05874 524 SMART ANK_2a 185 214 IPR002110 GO:0005515
Trre7g05874 524 SMART ANK_2a 48 78 IPR002110 GO:0005515
Trre7g05874 524 SMART ANK_2a 219 249 IPR002110 GO:0005515
Trre7g05874 524 SUPERFAMILY Ankyrin repeat 4 282 IPR036770 -
Trre7g05874 524 ProSiteProfiles Ankyrin repeat region circular profile. 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05874 Trre-Chr7 63418325 63420982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05874 2 524 Miscellaneous Gene Families AT2G01680 69.333 0.0 713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05874 7 63418325 63420982 Trre7g05874 7 63418325 63420982 ECH