Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05866 ATGGTTATGGTTATGGGTGGTAGTTGGAAGACGGCAATGTCGCTGAGTCACGTCCGTCCGCTAACATGCGCATCATCATCATCATTATCACGAATAGCTCCCCATCCACACGACCTCATCAAATGGATAACCAGAGAAGGTGGTTTCGTTCACCGTGCCGTCAAGATTGCTCAATTCGATTCCTCCAATGGCTTAGGATTAGTTGCTAAGGAACAAATCCCAATTGGAACTGACCTAATTGTTCTACCTCAACACATTCCTTTGCACTTCACCTCCCATCATAATCACTCTGATTCTCTCCTCTTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCTGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCCGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCGTGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCACGGTAACAAGCAATCAGATGGGATAGACTTCGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCAAATGCTAAAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTTGTGGCTGAGAAAGCGATCAAAGAAGATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTGTGATACATTCAAACCCTTATGACTGTATTGAGCTTAAATATGACGGCGCTCTTTTGGATGCTGCAAGCATGGCTGCTGGAGTTTCTGCACCAAACTTCTCCACACCTGCTCCATGGCAGCAACTTGTTTTATCTCAGCTAAATCTAGCTGGAGAATGTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTTAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATCGCTGTATTTCGCACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAGGATACAGTTACTGCTGAAGGCTAA 1431 0.4242 MVMVMGGSWKTAMSLSHVRPLTCASSSSLSRIAPHPHDLIKWITREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHHNHSDSLLFQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKRALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSDGIDFDIPMMLPLIDMCNHSFNPNAKIVQEQETGSTKMRVVAEKAIKEDDPLLLCYGCLSNDLFLLDYGFVIHSNPYDCIELKYDGALLDAASMAAGVSAPNFSTPAPWQQLVLSQLNLAGECPNLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLLSSKDTVTAEG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05866 476 ProSiteProfiles SET domain profile. 52 281 IPR001214 GO:0005515
Trre7g05866 476 Gene3D - 331 471 IPR036464 -
Trre7g05866 476 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 27 437 - -
Trre7g05866 476 Gene3D set domain protein methyltransferase, domain 1 8 294 - -
Trre7g05866 476 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 291 469 IPR036464 -
Trre7g05866 476 SUPERFAMILY SET domain 34 299 IPR046341 -
Trre7g05866 476 Pfam SET domain 64 281 IPR001214 GO:0005515
Trre7g05866 476 FunFam Histone-lysine N-methyltransferase setd3 8 294 - -
Trre7g05866 476 FunFam SET domain containing protein 317 470 - -
Trre7g05866 476 Pfam Rubisco LSMT substrate-binding 331 451 IPR015353 -
Trre7g05866 476 CDD SET_LSMT 53 295 - -
Trre7g05866 476 SMART set_7 52 287 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05866 Trre-Chr7 63395305 63400053 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre7g05866 SET 1.2e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05866 7 63395305 63400053 Trre7g05866 7 63395305 63400053 ECH