Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g05854 ATGGACGACGTAAAAGACAAGGTTAAAGGGTTCATGAAGAAAGTCACTTCTTCTTCTTCTTCCTCTGGCAAATTCAAGGGCCAAGGTAGAGTCTTGGGTTCTTCTTCATCTTCTTCTTCTTCCACACCTGTTAATTCCATTCCCACCTCTCGTCCATCACCCTCTCCCTCTCAGAATCCCAATCCCAATCCCAATCCCAAACCTAACCCTAATCCTAAACCCACTTCAACGATTGCTTCAAATCCTAGCAGAATCGACAAGCCTCGTAAAACTGGAGATGGGTTTGACCCATTTGATTCTTTGGTCACTTCTTCTCAGAGATCTCAAAATGGGTATACAGTTAATGTATATGAATGTCCCATTTGTAAAACACCCTTTCGATCCGAAGACGAGGTTTCTGAACATGTCGAAAGTTGTTTGAGTAACCCAATTGAACCTGTTGATAATGATGAAAAATGTGTCTCAAAAAGTGAAGAAATTGTTGAGTCTAATACTGATTTGGAGATTTGTGTTGGTACTTATGTTTCAGGGAATCCATCTGCTGGATCAGTTGATATTGTTCTGAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAAATTAGGTTGAGTAATCCGAAGATTAAAGAAGCTGTTGCTGAGGTTAATGGTGGGATTGAATTGCTTAGCTTTTTAGGTTTTGAGCTTAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCTACAGAGGAGACAATTAAATTGATTAAGAAAGCAATTGTGTTGTTGGAACCACAACTGGTACAAGTTCCTCCAAAGAAGGACAATTTGGTGTCTACAGCTTCTGCTGAGAAAGTAGTCGAGGCCGAACCAGCTGAGCCAAAAAAGATTGACAGACAGGTAAAGGTCTTCTTTGCTGTCGCTGAAAGTGTTGCAGCTAAAATTGAGCTACCGGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAACTAAGAAAAAAAAAGTTTGAAGAGTCTCAGCTTTTAATCCCCAAGTCACTTAGAGAAAAGCAAGCTAAAGCTGCAAAGAAGAGATACACAAGAACTGTTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTTCTGCTCTCTATGAGTTTGTCAGTTCCGCTATAAAAGAACCAGGTTTGGAATTTGAGCTAATGCATCCTGTTGTTGTTCAACGGAGAGTTGTCCCATGTTTTCCAAAAGCAGGGCAAAAGGCCAAAACAATAGAGGAAGAAGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTCGAAATCAGTGAACCACTTGTAAATGGTTAA 1419 0.4066 MDDVKDKVKGFMKKVTSSSSSSGKFKGQGRVLGSSSSSSSSTPVNSIPTSRPSPSPSQNPNPNPNPKPNPNPKPTSTIASNPSRIDKPRKTGDGFDPFDSLVTSSQRSQNGYTVNVYECPICKTPFRSEDEVSEHVESCLSNPIEPVDNDEKCVSKSEEIVESNTDLEICVGTYVSGNPSAGSVDIVLKLLRNIVKEPENVKFRKIRLSNPKIKEAVAEVNGGIELLSFLGFELREENGETWAVMEVPTEETIKLIKKAIVLLEPQLVQVPPKKDNLVSTASAEKVVEAEPAEPKKIDRQVKVFFAVAESVAAKIELPDSFYKRSAEEVRREAELRKKKFEESQLLIPKSLREKQAKAAKKRYTRTVIRIQFPDGVVLQGVFAPWEPTSALYEFVSSAIKEPGLEFELMHPVVVQRRVVPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g05854 472 MobiDBLite consensus disorder prediction 49 75 - -
Trre7g05854 472 MobiDBLite consensus disorder prediction 1 106 - -
Trre7g05854 472 SUPERFAMILY Ubiquitin-like 332 445 IPR029071 -
Trre7g05854 472 ProSiteProfiles UBX domain profile. 361 445 IPR001012 GO:0005515
Trre7g05854 472 Gene3D - 178 263 - -
Trre7g05854 472 CDD PUB 180 264 - -
Trre7g05854 472 Coils Coil 323 343 - -
Trre7g05854 472 SUPERFAMILY PUG domain-like 177 263 IPR036339 -
Trre7g05854 472 FunFam UBX domain-containing protein 6 355 446 - -
Trre7g05854 472 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 471 - -
Trre7g05854 472 MobiDBLite consensus disorder prediction 13 48 - -
Trre7g05854 472 Gene3D - 355 448 - -
Trre7g05854 472 Pfam PUB domain 183 256 IPR018997 -
Trre7g05854 472 Pfam UBX domain 361 411 IPR001012 GO:0005515
Trre7g05854 472 SMART PGNneu 182 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g05854 Trre-Chr7 63336795 63339485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g05854 1 393 C2H2 Transcription Factor Family AT2G01650 57.214 2.49e-148 427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05854 7 63336795 63339485 Trre7g05854 7 63336795 63339485 ECH