Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g04395 ATGATTGCAAGTAAAGATCATCGAAATGGTGTTGCTGACTCTGATGGTGAAACCTCTCGGAACAAGTTGTCAAGACCCAATTTTGAGCCTAACAAAGGTTACCCAGATGACAAAGATGTTGTTTTTCTCAGAGATTCACAGATGGGTGCTTCTGCTTCTGCTGTTGCTGGCCAAGAACTAACCCTCAGCTATCTCTGTTCAAATCCAAAATTGAATCTTGCTGAAAAAGAGATTCATGGTGAAACTTTTCTGATGAGTCAAAAGGGTAAAGAGATTATGGTTTCTGAGAATTCAAATCAAGATGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGAAACAAGAGAGGATTCTTCAAAGAGATCTGTTGAAGAAGATGTTGAAAGAGAAAATAATAGAGATAAAAAACCAAAGCTTGAGACATTGAATCTCTCTCTTGCTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAACGCTGTACACAACAACAATGGTGATCATCAACTAGTTAGAGCAAAACCTAGCAGGCCTTCAACTACACACACTTCATATTCAAATGATTATACAGCAGCACCTTCTTTGTCTTATTCTTATTCACACCCTTTTTCACATAATCCAAGTTGTTCTTTAACTCGCAATTCGACCGATAATTTTGATTATTCTGTTAGTAAAGATGATCAAATTTGGAATTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGAGATGGTGTTGTTGCTTTGTCAAATCATGGTGGTGGAACTAGTCTTAGTTCATTCATGCAGCAAGGTAATAATAATAATAATAATACTAGTTCAGAAAATCATTCTTTTTTCCCTTCTGAATTGCCTGCTAGACCTAGATTTGAAGCTCATTCGGGGGATTCTAGGGGAAGGAATTCTGAGAATATGAGAGGGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATGTTTCAAGACCAGAGAGAATTGTTAGGGAGATTGTTTCAGAATCGATCCCTATTGTTTCGTTGACAATTCAGGAGCTTACCGATGAAATTGTGGCATCAACTAAGGAATATTTGAAGAATCTGATTGAGAATAAGAAAGAAGAATTGGTCAGCCTTCAAAACCGGCTTGAGAGAAGGTCTGATCTTACCAAGGAGACTCTTTCAAAGTGCAATAAAGTTCAATTAGAGATTTTAGTTGCTGTCAAGATGGGACTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGGTTTACTTGTATAGGAGATGTAGAAATGTTACCTGCAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGCTTGGGAAATAAAGGGTTTTGTAGCTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGTTGTGATGTTTGTTCACACTGGTGCCATGCTGTTTGTGGCATCCAAAAGAAGCTTATCAAACCAGGACCAAGCTTGAAGGGTCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCGGAGATGTTTGGATTTGTTAAAGATGTGTTCATGTGTTGTGCTAAGGATTGGGGAGTTGAAACCTTGTTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGAAAAGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCGGATGCCTGCAATTACATCATGCAATTTTTCAGCTATGCTGAAAGCATGGCAAACTTTCCGGTTCCGGCTTCTGGTTTTTCTTCAAAGGAGTTGATAGGATCTCAAGCCAACCATCCAAAGGACATACTATCTCTTCCGAAATCTAGTTCTACAATACCAAAATACACTTACGACTCGAGCTATTCTAGGCCACATTCCAGTGCCCCGTCAAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGCGAACTAAAAAATGACGCTGATCTTCAATTGGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCCAAAATGTTCCAAACCAAGGCGGATGAAGCGAGGAGAGAGGCAGAAGGGTTCCAAAAGATGATCAGGACAAAGACTGCACAGATGGAAGAAGAGTATGCGACAAAGCTTTCGAAACTATGTCTGAATGAGACCGAGGAATCGCAGAGGAGGAAATTGGATGAGCTGAAAGTTGTGGAAAATTCATATATTGATTACTTTAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCAGAGAATGGAAGCAACAAAGCAGCATTGGGTTTAA 2388 0.3899 MIASKDHRNGVADSDGETSRNKLSRPNFEPNKGYPDDKDVVFLRDSQMGASASAVAGQELTLSYLCSNPKLNLAEKEIHGETFLMSQKGKEIMVSENSNQDGKWVERDFLSLSETREDSSKRSVEEDVERENNRDKKPKLETLNLSLALPDVSLSLTASNAVHNNNGDHQLVRAKPSRPSTTHTSYSNDYTAAPSLSYSYSHPFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVVALSNHGGGTSLSSFMQQGNNNNNNTSSENHSFFPSELPARPRFEAHSGDSRGRNSENMRGFEGLDGGKMRNVSRPERIVREIVSESIPIVSLTIQELTDEIVASTKEYLKNLIENKKEELVSLQNRLERRSDLTKETLSKCNKVQLEILVAVKMGLSSFLYGNLQLSEMVEVYLYRRCRNVTCKSLLPVDDCDCKICLGNKGFCSSCMCPICLNFDCASNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGVETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKIVSPSDACNYIMQFFSYAESMANFPVPASGFSSKELIGSQANHPKDILSLPKSSSTIPKYTYDSSYSRPHSSAPSKDLHQKDLKASILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEEEYATKLSKLCLNETEESQRRKLDELKVVENSYIDYFKMKKRMQDEIDGLLQRMEATKQHWV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g04395 795 MobiDBLite consensus disorder prediction 1 22 - -
Trre7g04395 795 Coils Coil 773 793 - -
Trre7g04395 795 MobiDBLite consensus disorder prediction 115 139 - -
Trre7g04395 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 541 560 IPR004082 -
Trre7g04395 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Trre7g04395 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 422 443 IPR004082 -
Trre7g04395 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Trre7g04395 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 468 488 IPR004082 -
Trre7g04395 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Trre7g04395 795 Coils Coil 697 731 - -
Trre7g04395 795 MobiDBLite consensus disorder prediction 161 188 - -
Trre7g04395 795 CDD PHD_OBE1_like 461 520 IPR047578 -
Trre7g04395 795 MobiDBLite consensus disorder prediction 1 38 - -
Trre7g04395 795 MobiDBLite consensus disorder prediction 266 286 - -
Trre7g04395 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 81 794 IPR004082 -
Trre7g04395 795 MobiDBLite consensus disorder prediction 295 311 - -
Trre7g04395 795 Pfam Coiled-coil region of Oberon 658 784 IPR032535 -
Trre7g04395 795 Coils Coil 359 386 - -
Trre7g04395 795 MobiDBLite consensus disorder prediction 266 321 - -
Trre7g04395 795 Pfam PHD - plant homeodomain finger protein 431 555 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g04395 Trre-Chr7 51788551 51791986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g04395 431 560 PHD Gene Family AT5G57380 25.385 5.53e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04395 7 51788551 51791986 Trre7g04395 7 51788551 51791986 ECH