Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00692 ATGAGACCAATTTTTGATCTTGAACTAGAGGCCACAGAGGAATATGAATCTGAAGTCAGTAGCCATGATGTTGCTTCCAACTCTTCCATCCTCACAAATCCAACAGAACCTATCTCACTGGACTTATCACTTAATTTCAACTTGAACAATGACTTAGTTGCTAAAGATTCAACAGGAATCTCATTCTCAAGCACTAGTGAGAGCAGCAATGAACCTATTATCCCAAGAGTTTTCTCTTGCAATTACTGTCGGCGCAAATTTTATAGCTCTCAAGCGCTCGGTGGACACCAAAACGCGCACAAAAAAGAAAGAACATTAACAAAACGAGCTATGCGGATGGGACTATTCACCGAGAGGTATGCAAGTTTAGCATCTCTCCCTCTAAATGGTAATTCTTTCAGGTCTTTAGGTATAAAGACACATTCTTCACTACACCATAGTTTTTCGCCACCAACAATATGGCCTATTCCGGAGATAAAAAGTAATGCGAGATTCAAACAAGGATGTATCGGTCATCCGATATTATTGGAGGATGATGAGACAGAATTGTCCTGGCAAGGTAGTTTCCATCAGGTTACTGAGGGTGGTAGTAATAATCAGAGTTCAAATCTGTATTTTACTGAGGTGAATGTGAAACCATTGGTTGATAATATAGATATTAATTCAGCACCTGAATTAACATTGAAACTTTGA 693 0.3896 MRPIFDLELEATEEYESEVSSHDVASNSSILTNPTEPISLDLSLNFNLNNDLVAKDSTGISFSSTSESSNEPIIPRVFSCNYCRRKFYSSQALGGHQNAHKKERTLTKRAMRMGLFTERYASLASLPLNGNSFRSLGIKTHSSLHHSFSPPTIWPIPEIKSNARFKQGCIGHPILLEDDETELSWQGSFHQVTEGGSNNQSSNLYFTEVNVKPLVDNIDINSAPELTLKL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00692 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Trre5g00692 230 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Trre5g00692 230 Gene3D Classic Zinc Finger 57 124 - -
Trre5g00692 230 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 23 161 IPR044246 GO:0009788
Trre5g00692 230 FunFam Zinc finger protein 2 55 124 - -
Trre5g00692 230 SUPERFAMILY beta-beta-alpha zinc fingers 76 106 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00692 Trre-Chr5 4735275 4735967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00692 1 230 C2H2 Transcription Factor Family AT1G66140 44.981 9.65e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g00692 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00692 5 4735275 4735967 Trre5g00692 5 4735275 4735967 ECH
Trre5g00692 5 4735275 4735967 Trre9g04121 9 49113660 49114397 PCT