Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g00691 ATGGTTTTGTCATGGACAAGAAGAAACATGTTCCGTCGTACCCACAAAGCAAAAGAACAACTTTCCGGCGGCGATTTAACGGTGGAGGAGATAACAATCCCATCCCATTTCCGGTGTCCGGTGAGTCTTGACTTGATGAAAGATCCAGTTACTTTATCAACAGGAATCACTTATGACAGAGTAAGTATTGAAAAATGGATTGAATCTGGTAACAAAACATGCCCAGTTACAAATCAGAAACTTTTAACCTTTGAAATAACACCAAATCATACTATAAGAAAAATGATTCAGAGTTGGTGTGTTGAAAATATTTCTTATGGGATTGAAAGAATTCCAACTCCTCGTATACCTGTTTCTAGTTACGAGGTTTCCGAGGTTTGTACTAGGTTGTTGTCCGGTTGTAAAAGTTTAGATGAGAAAAAATGTGTTGAGTTTGTTGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAAAGAGTTATTGTTGGAAATGGTGCTTGTTATGTTCTTGCAACGGTTTTTGATTCTTTTTCATGTGTTTCCTTTGAGAAACATGTTGTTATTTTAGAAGAGATTTTGGAGATTTTAACATGGATGGTTATGACTCCTTTTGGTGAAACAAAATCAAGATTGTTTTCATCATCAAATTCTTTAAGTTGTTTGGTTTGGTTTCTTGATGGTAAAGATTTAGGAGCAAGACAAAATGCTGTTTTGTTGCTTAAAGAAACTATGAATGTTGAGGAATTATCAAAAGTTGAAGGTGTTGTTGAAGGTTTGATTAAGATTATTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACCACAATTTTCAAGTTGGTTTCATCAACTAAAAATAGATTTGAAATTGGTGAAAGATTTGTTGAATTGGGTTTGGTTTCATTTTTACTTGAAACAATTGTTGATGGAGAAAAAAGGATATGTGAGAAAGCACTTGGTGTGTTGGATTGTTTATGTGATTTCAAAAAAGGAAATGAGGTTATTAAAATGAATGCTTTAACTTTACCTCTTGTGATTAAGAAACTTTTGAGGGTTTCTCCTTTAGCTTCTAGTTTTGTTGTTGGTATTGTTAGGAAAATAGTATGTGAGAAAAAGGAAGAAGGAGTTTTGATTGAGGCAATTCAACTTGGTGCTTTTCAGAAATTGTTGGTTATGTTGCAAGTTGGATGTGAGGAGAAAACAAAGGAGGATACTACTGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCAGAATGTGTTGACTCTTCATTAGATTTCAAGTATCTTAAGAATTAA 1314 0.3402 MVLSWTRRNMFRRTHKAKEQLSGGDLTVEEITIPSHFRCPVSLDLMKDPVTLSTGITYDRVSIEKWIESGNKTCPVTNQKLLTFEITPNHTIRKMIQSWCVENISYGIERIPTPRIPVSSYEVSEVCTRLLSGCKSLDEKKCVEFVGKIKVWWRESERNKRVIVGNGACYVLATVFDSFSCVSFEKHVVILEEILEILTWMVMTPFGETKSRLFSSSNSLSCLVWFLDGKDLGARQNAVLLLKETMNVEELSKVEGVVEGLIKIIKEPIGSSATKACLTTIFKLVSSTKNRFEIGERFVELGLVSFLLETIVDGEKRICEKALGVLDCLCDFKKGNEVIKMNALTLPLVIKKLLRVSPLASSFVVGIVRKIVCEKKEEGVLIEAIQLGAFQKLLVMLQVGCEEKTKEDTTELLKLLNGYRSKAECVDSSLDFKYLKN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g00691 437 ProSiteProfiles U-box domain profile. 32 106 IPR003613 GO:0004842|GO:0016567
Trre5g00691 437 Gene3D - 120 420 IPR011989 -
Trre5g00691 437 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Trre5g00691 437 SUPERFAMILY RING/U-box 24 103 - -
Trre5g00691 437 PANTHER WDSAM1 PROTEIN 28 426 IPR045185 GO:0061630
Trre5g00691 437 CDD RING-Ubox_PUB 34 85 IPR045210 -
Trre5g00691 437 SMART Ubox_2 36 99 IPR003613 GO:0004842|GO:0016567
Trre5g00691 437 FunFam RING-type E3 ubiquitin transferase 27 109 - -
Trre5g00691 437 SUPERFAMILY ARM repeat 147 403 IPR016024 -
Trre5g00691 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g00691 Trre-Chr5 4714265 4715578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g00691 30 436 U-box Gene Family AT5G37490 46.860 1.09e-113 339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g00691 5 4714265 4715578 Trre5g00691 5 4714265 4715578 ECH