Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01247 ATGTCGATATCAGTGGACCATAATGATCAAAGAGCTGAAGCGATTCCCTGCTCCACAGCTACACCAAATTGGACTGTTCATGTTTCAGATATAAGAACGGTTAAGGTGAGTAACATATCACAGATTACTTCCAAAAAGGATATCGAAGAATTCTTTTCATTCTCAGGCGATATTCAATATATTGAAATGCAAAGGGAATCTGATCGCACTCAGGTTGCTTATGTTACCTTTAAGGATTCACAGGGAGCAGAGATGGCAGTTCTCTTAACGGGTTCTAAGATAGCTGACCTATATGTCACCATCTCGCCTGTGGAGAAGTATCAGCTTCCCCCTGAAGCGCTTCCCTCGAGTCCAACAAACAAAAGTGCTGCTGCAGTTAAGAAGGCTGAAGATGTAATTAGTACTATGCTTGCCAAGGGTTTCATTTTAGGAAAGGATGCGATCAACAAGACAAAATCCTTCGATGAACGTCTTCAATTGACCTCAAATGCTTCTTCCGCAGTTGCATCCATAGATAATAAAATAGGTTTAAGTGATAAACTAAGTATTGGAACAACCATTGTCAACGAGAAGGTGAAAGAGATGGATGAAAGGTATCAACTTTCTGGAATGACAAAATCTGCTATTGCTGTTGCCGAGCAAAAGGCAAGTAGTGCTGGATCCGTTATCATGAGTAATTTTTACGTCTTAACCGGAGCTTCATGGTTTTCAAGTGCATTTAGCGCTATTGCTAAGGCAGCTGAGGATGTCAGCTCGATGACCAAGGAAAAGCTTGAACAAGCTGAGGTGGACAAAAAGGAGATCATTTACGGTGAAAGAATAGGGACGGTTGATGAATATTCTCAGATGCACTTCGAAGACTCTTTAACCGGCGGCCCTGCAGTAGTTCCGGTTAGTTCTGACAATGACAGTAAATCTGGTAATTTTCTAACTTGA 936 0.4145 MSISVDHNDQRAEAIPCSTATPNWTVHVSDIRTVKVSNISQITSKKDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKDSQGAEMAVLLTGSKIADLYVTISPVEKYQLPPEALPSSPTNKSAAAVKKAEDVISTMLAKGFILGKDAINKTKSFDERLQLTSNASSAVASIDNKIGLSDKLSIGTTIVNEKVKEMDERYQLSGMTKSAIAVAEQKASSAGSVIMSNFYVLTGASWFSSAFSAIAKAAEDVSSMTKEKLEQAEVDKKEIIYGERIGTVDEYSQMHFEDSLTGGPAVVPVSSDNDSKSGNFLT 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01247 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 106 IPR000504 GO:0003723
Trre1g01247 311 SUPERFAMILY RNA-binding domain, RBD 25 106 IPR035979 GO:0003676
Trre1g01247 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 95 IPR000504 GO:0003723
Trre1g01247 311 Gene3D - 28 102 IPR012677 -
Trre1g01247 311 MobiDBLite consensus disorder prediction 292 311 - -
Trre1g01247 311 MobiDBLite consensus disorder prediction 295 311 - -
Trre1g01247 311 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 31 261 - -
Trre1g01247 311 SMART rrm1_1 33 102 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01247 Trre-Chr1 9458062 9461671 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01247 1 9458062 9461671 Trre1g01247 1 9458062 9461671 ECH