Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01246 ATGATAATCAGATCCAGAAATTCCAAACGGAAGCTTCCACAGGAAGCACCATTGCACGTCGTTAGCAAGAAGCTCCGGTCAAAGATTCCTCGTCGGAGAAGACGTCAGATCTCACCTGTGCTAGTTGTTTCACCGAGATTCAAAGTTTATGGAGAGAATCGGAATTTCTCTGTTATTTCAGTTGATTCGAGTTCGAGCTCCGGTTTGGATTTCGCCGGCGGCGAAGTTTCAGTTTCGTGTGATTCGAGTAGGATTTCTGCTGTTTTGTCCGGTAAAGGAAGAACGAGATCGATAAATGAGATTTCAAGCGGAGTTGAATGTGTTCGGAAGAGAGAATGTGTTAGTTTGTTGAGGAATCGGAGTTTTGAGAAACGAAATGAAAACGAAGTGGAAGTTTCGGAGACTTCGTGTGTGGATTCTAATTCTGGAGTTCGTGATCGGAGTAGAAGCTTGATTTTGAAGTTTAAGAGTGGAAAAGAGAACGATGAAGTTTCAGAAGTTACTTTTGCGGAGAATTCAAAATCGAGTAACGGTAATTTGAATATCTCGTCGGAGATAACACGAAACGATGTCGTTTCGGCTAGTTCTGGTGCTCGAGAAACGTCGTTTATGGAGGAGAAGAGTAAAATCAACGAAAACAGAGCATCGGAATCTGAATTTTCTCAAATTTCGAGAAACCGTAACGCTGATGAGAATTGTACCGATTTGCTAGCGCAATCGATTATGAAGAATTGTTCTGATAATTCAGGTTACGATTCCGATCTAGCTTGCTCTGAGCAATTCTACGAGGATGATGATTCAGAGTACTGTTCAAGCCAGGGAACTACATTTTCTGATCTTCACTCCGAGATTTTCGGCGAATGTTCCGATTACAGTCCGTCTCAGTTCCTTGATTCTGGAAGCCAGTTTTCGCAGGGATCAGTTGGTGAAACGCCTTCTCACACTTATGCTTTGTTCCTTCGATTCCGCGACGAATTCATGATGCTAAGTTCTCCAGTCAATAATTCTTCAAGTGTTGAAGAAGTTTCTATTCAACGCAATTTTTCAAGGTTTGAAGATTTGGATGATGAAGACAGTTACCAGATGCTTAGAAAGAGAGAACGTAGGCAAGTTTTCATGTGGAATTATGCTGAAAGATATTTCTCTACAACGAAATTCACCGACCTTGTGTTTCAGCAACGCTCAAAAATGGTTCACTGGATCGTTGAGCAATCTTATCGGAAACAACTTCGACAAGAAACAATGTTTCTTGGAATCAACCTACTTGACCGTTTCCTGAGCAAGGGATACTTCAAAGCAGAAAGAAACCTTCAAATTGTTGGAATAGCGTGCCTTACATTGGCAACTAGAATTGAAGAAAACCAGCAATATAACAGAGTGGGGCAAAAAAATTTCTACATAGAAAAAAGTGCATACAGTAGATGCGAAGTGGTGGCTATGGAATGGATGGTGCAGGAGGTGCTTGAGTTCGAGTGTTTTCATCCAACCATCTACAATTTCTTGAGCTTCTACCTAAAAGCTGCTAATGCTGATGCTGTAGTGGAGAAAAGGGTCACGTGCCTAGCATTACTGGCTCTGGCAGGTCCTGGTCAGCTGTGTTACTGGCCCTCAACTATTGCCGCTGCAGTTGTAATCCTGGCTTGTCTAGAACTCAATCAGAAAGCATCCCACAAAGTCATAGGGATCCACATTAGATCAAAGGATGAGAATCTGCACGAATGCATGGAGAGTCTGGAATGGTTGCTACGCTATCTATGA 1758 0.4226 MIIRSRNSKRKLPQEAPLHVVSKKLRSKIPRRRRRQISPVLVVSPRFKVYGENRNFSVISVDSSSSSGLDFAGGEVSVSCDSSRISAVLSGKGRTRSINEISSGVECVRKRECVSLLRNRSFEKRNENEVEVSETSCVDSNSGVRDRSRSLILKFKSGKENDEVSEVTFAENSKSSNGNLNISSEITRNDVVSASSGARETSFMEEKSKINENRASESEFSQISRNRNADENCTDLLAQSIMKNCSDNSGYDSDLACSEQFYEDDDSEYCSSQGTTFSDLHSEIFGECSDYSPSQFLDSGSQFSQGSVGETPSHTYALFLRFRDEFMMLSSPVNNSSSVEEVSIQRNFSRFEDLDDEDSYQMLRKRERRQVFMWNYAERYFSTTKFTDLVFQQRSKMVHWIVEQSYRKQLRQETMFLGINLLDRFLSKGYFKAERNLQIVGIACLTLATRIEENQQYNRVGQKNFYIEKSAYSRCEVVAMEWMVQEVLEFECFHPTIYNFLSFYLKAANADAVVEKRVTCLALLALAGPGQLCYWPSTIAAAVVILACLELNQKASHKVIGIHIRSKDENLHECMESLEWLLRYL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01246 585 SUPERFAMILY Cyclin-like 495 582 IPR036915 -
Trre1g01246 585 PANTHER CYCLINS 336 578 IPR039361 -
Trre1g01246 585 Pfam Cyclin, C-terminal domain 495 579 IPR004367 -
Trre1g01246 585 Pfam Cyclin, N-terminal domain 379 491 IPR006671 -
Trre1g01246 585 ProSitePatterns Cyclins signature. 394 425 IPR006671 -
Trre1g01246 585 Gene3D - 373 487 - -
Trre1g01246 585 Gene3D - 488 585 - -
Trre1g01246 585 SUPERFAMILY Cyclin-like 354 491 IPR036915 -
Trre1g01246 585 MobiDBLite consensus disorder prediction 197 223 - -
Trre1g01246 585 SMART cyclin_7 399 486 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01246 Trre-Chr1 9452267 9456566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01246 358 553 Core Cell Cycle Gene Families AT5G11300 33.168 1.15e-19 89.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01246 1 9452267 9456566 Trre1g01246 1 9452267 9456566 ECH