Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01241 ATGGAGGGTAAAGACGTAGGAGGAAGAAATGTTGAGGGAATTAATGTAGGAAAAAAAAATGAAAATGAAAAAGATGAAGAGATTCTTAAGAAGATTATTGCAAGTCATCCTTTGTTTGAAGTTATGATTGAGTCTCACATCAATTGTTTGAAGGTTGGATCTGAGGATGGAGGGATTGATATTATAAGTGATGCATGGAAGAAATTGGTCAACACAAAGTCTAAAGCAGCGATTAGTCCAAACACTTCAGAGCTTGATCATTTCATGGAAGCATATTGCATGGCACTGAGTAACCTCAAAGAAGTGATTGAAGAACCAACAAAAGAAGCAAAATCTTTCATCAATGCCACATACATTCAACTGCAGGAACTCAATGAACCAAATAATGAACCCGCAAATTAA 402 0.3582 MEGKDVGGRNVEGINVGKKNENEKDEEILKKIIASHPLFEVMIESHINCLKVGSEDGGIDIISDAWKKLVNTKSKAAISPNTSELDHFMEAYCMALSNLKEVIEEPTKEAKSFINATYIQLQELNEPNNEPAN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01241 133 SMART KNOX1_2 27 71 IPR005540 GO:0003677|GO:0005634
Trre1g01241 133 SMART KNOX2_2 74 126 IPR005541 GO:0003677|GO:0005634
Trre1g01241 133 Pfam KNOX1 domain 29 53 IPR005540 GO:0003677|GO:0005634
Trre1g01241 133 Pfam KNOX2 domain 83 124 IPR005541 GO:0003677|GO:0005634
Trre1g01241 133 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 ISOFORM X1 12 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01241 Trre-Chr1 9433066 9434738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01241 25 124 Homeobox Transcription Factor Family AT4G08150 31.731 1.42e-12 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01241 1 9433066 9434738 Trre1g01241 1 9433066 9434738 ECH