Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01220 ATGGCAATCGAAACTCTAGTATTAGGTGCTGGTCAAGAGGTTGGGAAAAGCTGCGTTGTAGTAAACATCAATGGAAAACGAATCATGTTCGATTGTGGCATGCATATGGGTCACACTGATCACCGTCGTTTCCCTGATTTCTCTCTTATTTCACCTTCTGGCAATTTCAATGATGCTCTCTCTTGCATCATCATCACTCATTTTCACTTGGATCATGTTGGAGCGTTGGCTTACTTCACTGAAGTTTGTGGATATAATGGGCCGGTTTACATGACGTACCCAACAAAAGCTTTGTCTCCTTTGATGTTGGAAGACTTTCGGAAAGTGATGGTTGATCGTCGAGGTGAGGAAGAACAATTCAGTTCTGAACATATTGCTGAGTGCATGAAGAAAGTTATTGCAGTAGATCTGAAGCAGAATGTGCAAGTAGATGAAGATCTGCAGATACGTGCATATTATGCCGGCCATGTTATTGGAGCTGCGATGTTCTACGTAAAAGTGGGAGATGCAGAAATGGTTTATACAGGAGACTACAATATGACACCAGATAGACACCTAGGAGCAGCTCAAATTGATCGACTACGACTTGACCTTCTTATAACTGAATCCACATATGCAACTACGATACGTGATTCGAAATATGCTCGAGAGAGGGAATTCCTCAAAGCTGTTCATAAATGTGTTTCTGGTGGAGGAAAGGTTCTTATTCCAGCATTTGCTCTCGGAAGAGCTCAGGAACTATGCATTTTGTTGGATGACTACTGGGAACGAATGAATTTGAAGGTTCCTATCTACTTCTCAGCAGGATTAACTATTCAAGCTAATATGTATTACAAGATGCTTATTGGTTGGACAAGCCAGAAGATTAAAGATACACACTCCACACACAATGCATTTGATTTTAAGAATGTTCACAAATTTGATAAATCTATGATAGATGCTCCTGGTCCTTGTGTTCTCTTTGCCACTCCTGGGATGATAATTGCTGGATTTTCACTTGAAGTTTTTAAGCACTGGGCACCATCAGAAAATAATCTTGTCCTTCTACCTGGGTATTGTGCGGCAGGAACTGTAGGACATAAATTATCATCAGGTAAGCCCACCAAAATTTATACAGATCCTGATACACAGATTGACGTGCGTTGCCAGATTCACCAGTTGGCTTTTAGTCCTCACACCGATTCTAAGGGGATAATGGATCTTGTAAAATTTCTCTCCCCAAAGCATGTTATACTAGTGCACGGTGAGATGCCTAAGATGGCTTCTCTAAAAGAAAAAATTCATTCTGAATTGGGGATCCCGTGTTATAATCCTGCAAACAATGAAACTGTATCCATTCCTTCAACTCACTACGTAAATGCAGAAGCCTCCGACACTTTCATCCGAAACTGCTTGAACCCAAACTTCACGTTTCAGAAATGCGATTCAGTGGACACGTGTAATTCTACTCTGATAGACAGAAATTTAACGCCTGAACTTCAAGTCGAAGATGAAAGAGTAGCAGATGGAATTTTGGTTATGGAGAATAACAAAAAGGCAAAGGTTGTTCACCGAGATGAGCTTTTGCTAATGTTGGACGAAAAGAAGCACGAGGTTTAG 1599 0.4084 MAIETLVLGAGQEVGKSCVVVNINGKRIMFDCGMHMGHTDHRRFPDFSLISPSGNFNDALSCIIITHFHLDHVGALAYFTEVCGYNGPVYMTYPTKALSPLMLEDFRKVMVDRRGEEEQFSSEHIAECMKKVIAVDLKQNVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPAFALGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKDTHSTHNAFDFKNVHKFDKSMIDAPGPCVLFATPGMIIAGFSLEVFKHWAPSENNLVLLPGYCAAGTVGHKLSSGKPTKIYTDPDTQIDVRCQIHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEMPKMASLKEKIHSELGIPCYNPANNETVSIPSTHYVNAEASDTFIRNCLNPNFTFQKCDSVDTCNSTLIDRNLTPELQVEDERVADGILVMENNKKAKVVHRDELLLMLDEKKHEV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01220 532 SMART Lactamase_B_5a 15 232 IPR001279 -
Trre1g01220 532 FunFam Integrator complex subunit 11 isoform X3 8 234 - -
Trre1g01220 532 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER 5 532 - -
Trre1g01220 532 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 378 438 IPR011108 -
Trre1g01220 532 FunFam Cleavage and polyadenylation specificity factor subunit 3-II 212 392 - -
Trre1g01220 532 CDD INTS11-like_MBL-fold 6 203 IPR041897 -
Trre1g01220 532 Gene3D - 212 390 - -
Trre1g01220 532 Gene3D - 8 427 IPR036866 -
Trre1g01220 532 Pfam Beta-Casp domain 244 362 IPR022712 -
Trre1g01220 532 Pfam Metallo-beta-lactamase superfamily domain 21 191 IPR001279 -
Trre1g01220 532 SMART Beta_Casp_2 244 362 IPR022712 -
Trre1g01220 532 SUPERFAMILY Metallo-hydrolase/oxidoreductase 3 446 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01220 Trre-Chr1 9246242 9255417 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01220 1 9246242 9255417 Trre1g01220 1 9246242 9255417 ECH