Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01216 ATGTCAATTCTCAGCTCTCTCCGATCATCAAAACTCATCACCTGGAAACCCACCGGAAAGCTTCAACAAACCCTAACAAGATCTGTGGAACGCAAAGGAATCTCTTTGCATTCAGGAAAAGTTTCGAAGGTGAAATTGTGTCCTGGATTTGCAGGTCAAGGAAGGTATTTCGATTTTCGGTCGAATTTGGTTCCTGCTTCTGTTGAATTTGCTCAGGTTTCGCCTCTTTGTACTACTTTGTGTAAAGATGGTTTGAGGATTCGGACGGTTGAGCATTTGCTTTCGGCGTTGGAGGCTGTTGGTGTTGATAATTGTAGAATTGAGATTGAGAATTTGGATGATCAAGGTGATGATGTGGAGATTCCTATACTTGATGGGTCGGCAAGGGAATGGGTGGCAGCCTTGGAAGAAGCGGGTTTAGAGATAGCAACTGATGTTGATGGAAAAAGCTATGAGAAAATAGCTCCACATGTTAATGAACCAGTGCATGTTTGGAGGAATGATTCTTTTATTGCCGCATTTCCTTCAGAAGTGGTTCGAGTAACTTATGGTATAAACTTTCCACAGGCACCTGCTATTGGCTGCCAGTGGTTTTCTACAACCCCCTTGGATGATTTAGTTTATTCCAAGCAAATAGCAATGTCAAGAACCTTCTGTATCTATGAGGAGGTTGAGCAAATGCGCAATGCTGGACTTATCAAAGGGGGTTCTCTAGAAAATGCCATTGTGTGCAGTGCCAGTAAAGGTTGGTTGAATCCACCTCTTCATTTCAGTGATGAACCATGTCGTCACAAGATTTTAGATCTTATTGGTGATCTCTCGCTGTTTGCTCAGTTTGGTAATCAAGGACTCCCCGTAGCACACATTGTAGCTTATAAGGGTGGTCATGCATTGCATGTTGATTTGGCTCGCCAACTGATGGGAATAACATGA 933 0.4298 MSILSSLRSSKLITWKPTGKLQQTLTRSVERKGISLHSGKVSKVKLCPGFAGQGRYFDFRSNLVPASVEFAQVSPLCTTLCKDGLRIRTVEHLLSALEAVGVDNCRIEIENLDDQGDDVEIPILDGSAREWVAALEEAGLEIATDVDGKSYEKIAPHVNEPVHVWRNDSFIAAFPSEVVRVTYGINFPQAPAIGCQWFSTTPLDDLVYSKQIAMSRTFCIYEEVEQMRNAGLIKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFAQFGNQGLPVAHIVAYKGGHALHVDLARQLMGIT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01216 310 Gene3D lpxc deacetylase, domain 1 20 146 IPR015870 GO:0008759|GO:0009245
Trre1g01216 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Trre1g01216 310 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Trre1g01216 310 Gene3D lpxc deacetylase, domain 2 157 309 IPR011334 GO:0008759|GO:0009245
Trre1g01216 310 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 20 310 IPR004463 GO:0008759|GO:0009245
Trre1g01216 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Trre1g01216 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Trre1g01216 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 4 308 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01216 Trre-Chr1 9208059 9212445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01216 5 306 Carbohydrate Esterase AT1G25054 66.225 4.79e-148 417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01216 1 9208059 9212445 Trre1g01216 1 9208059 9212445 ECH