Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01210 ATGGATTCAAACTCACTATGCTTCATAACCCATCAAGAAATTTTCAATGTGGTTCGATCTGGGAACCTTGAAGGACTCAAAGTGTTACTGAAACATGTTAACAAAGGTGAATCCTCAAATGGATCATCATCATCATCATCATCATCAATTTCTGAATTCATGTCCATGCAGAATGATGCTGGAGAGACTTTATTGTATATAGCTGCAGAAAATGGTGCTAAGGATTTGTTCTGTTTCTTGTTAAGTTTCTGTGATTTGGAGATACTCAAGATTAGGTCTAAATCTGATATGAATGCATTTCATGTTGCAGCTAAGCGTGGCCATTTGGAAATTGTGAGGGAGATTTTGAGTATTTGGCCCGAGGCTTGTAAGTTATGCGACTCCTCGAGCACTAGTCCACTTTATTTGGCTGCTGTTCAAGACCATTTGGATGTGGTGAATGCTATTTTGGATGTTGATGTCAGTTCAATGATGATAGTAAGAAAAAACGGCAAAACTGCATTGCATAATGCTGCTAGGTACGGCATTCTTCGCATTGTAAAAGCACTTATTGAAAGGGATTCAGCAATTGTTTGTATCAAAGATAGAAAGGGTCAAACAGCACTGCATATGGCTGTAAAAGGCCAAAGTACTTCAGTAGTTGAGGAGATTTTACAAGCCGACCCGATGGTATTGAATGAACGAGATAAGAAGGGTAATACAGCTCTTCACATGGCCACTCGGAAAGCTCGCTCACAGACAGTGAGCTTTCTGTTGAGCTATGCATCTATGAATGTCAATGCCATAAATAATCAACAAGAAACAGCATTGGACTTGGCAGATAAACTTCCATACGGAGATTCATCTTTGGAAATCAAGGAAGCCCTTTCGGAATGCGGTGCCAAGAATGCCAGACATATTGGAAAAGTGAATGAAGCCATGGAACTTAAAAGAGCTGTGAGTGATATAAAGCACAAAGTGCAGTCACAACTAATACAGAACGAAAAAACTCGCAAACGGGTTTCTGGTATAGCTAAGGAACTGAGAAAGATTCATCGGGAAGCAATTCAAAACACGATAAATTCTGTCACGGTAGTTGCTGTCCTTTTTGCCTCAATAGCATTCATGGCTTTGTTCAGTTTGCCAGGTCAATATAGAAAGTACCAACCGGAGGCAGGTAAAGCAAATATAGCTCACGAGGCTGCGTTCAGTGTTTTCTGTCTTTTGAACGCAACGTCTCTTTTCATTTCTCTTGCGGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAGGCAGATTGTATCAGTGATTAACAAGCTAATGTGGACGGCTTGTTCATGTACTTGTGGAGCTTTTCTCGCAATAGCTTTTGTCGTTGTTGGAAAGGAAAGATGGATGGCTACTACTGTAACCATGTTGGGAACACCAATTCTAGTTGGAACTCTAGCATACTTGTGCTACTTTGTGTTCCGGCGACATTTTGGACTTCGAAGTGATTCCCAGAGAGTACTAGCTAAGAGACCAAGTGGAAGCAAATCATTCTCGTGGTCTTACTCTGCACATATATCAGACCTGGAGGAATATAATTCTGATGTTGAGATGTATGCTCTGTGA 1608 0.408 MDSNSLCFITHQEIFNVVRSGNLEGLKVLLKHVNKGESSNGSSSSSSSSISEFMSMQNDAGETLLYIAAENGAKDLFCFLLSFCDLEILKIRSKSDMNAFHVAAKRGHLEIVREILSIWPEACKLCDSSSTSPLYLAAVQDHLDVVNAILDVDVSSMMIVRKNGKTALHNAARYGILRIVKALIERDSAIVCIKDRKGQTALHMAVKGQSTSVVEEILQADPMVLNERDKKGNTALHMATRKARSQTVSFLLSYASMNVNAINNQQETALDLADKLPYGDSSLEIKEALSECGAKNARHIGKVNEAMELKRAVSDIKHKVQSQLIQNEKTRKRVSGIAKELRKIHREAIQNTINSVTVVAVLFASIAFMALFSLPGQYRKYQPEAGKANIAHEAAFSVFCLLNATSLFISLAVVVVQITLVAWDTRAQRQIVSVINKLMWTACSCTCGAFLAIAFVVVGKERWMATTVTMLGTPILVGTLAYLCYFVFRRHFGLRSDSQRVLAKRPSGSKSFSWSYSAHISDLEEYNSDVEMYAL 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01210 535 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 15 515 - -
Trre1g01210 535 Pfam Ankyrin repeats (3 copies) 65 151 IPR002110 GO:0005515
Trre1g01210 535 Pfam Ankyrin repeats (3 copies) 197 260 IPR002110 GO:0005515
Trre1g01210 535 Pfam Ankyrin repeat 163 186 IPR002110 GO:0005515
Trre1g01210 535 SUPERFAMILY Ankyrin repeat 14 276 IPR036770 -
Trre1g01210 535 Gene3D - 157 311 IPR036770 -
Trre1g01210 535 ProSiteProfiles Ankyrin repeat profile. 231 264 IPR002110 GO:0005515
Trre1g01210 535 Pfam Domain of unknown function 347 456 IPR026961 -
Trre1g01210 535 ProSiteProfiles Ankyrin repeat region circular profile. 163 190 - -
Trre1g01210 535 SMART ANK_2a 129 159 IPR002110 GO:0005515
Trre1g01210 535 SMART ANK_2a 60 88 IPR002110 GO:0005515
Trre1g01210 535 SMART ANK_2a 231 261 IPR002110 GO:0005515
Trre1g01210 535 SMART ANK_2a 197 227 IPR002110 GO:0005515
Trre1g01210 535 SMART ANK_2a 95 124 IPR002110 GO:0005515
Trre1g01210 535 SMART ANK_2a 163 192 IPR002110 GO:0005515
Trre1g01210 535 ProSiteProfiles Ankyrin repeat profile. 163 190 IPR002110 GO:0005515
Trre1g01210 535 Gene3D - 3 156 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01210 Trre-Chr1 9158716 9161061 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01210 1 531 Miscellaneous Gene Families AT2G01680 67.105 0.0 706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01210 1 9158716 9161061 Trre1g01210 1 9158716 9161061 ECH