Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01201 ATGATCCGAAACATTTTGAAAAAGTGTCATCATCAGTTTCACAACAACCCAACAACAACTTTGAATGGAAAAACCCTTCTCACCTCACTCATTCACACCCTTTCCAATTCAAACCAAAACGAGTTTGATGAATCCAAATGGAAGAATGAACAACAACAACAAGAACAAAATTCTGCGTTTCAGATTTCTCATCCTTGGCCTGAATGGGTTGACTTGATGGAATGTTTGCTCAAAAAGGGTCATTTTCATGCAGAGGGTAACCCATTTTTGAATCCTAATTTGGGTTCTAAAGAATCAAATCTTATTAGAACTGCTTGTCTCAATTTTGGTAGAGACAATTCTCATTTTTTAAGGTTTTTGTCTCGAAAAGATATGGGAGTTATTGTAACATATGGATGTCCAAACTTAGATAGGAAAGTGGTTAACTCAGGAAAGCGTCTGAGAGCACATGTTGGCATTGATGAAGGAAATGTGTGCAGCTCGTGCAATTTGAGGGGGAACTGTGAAAGGGCATTCGTCAAAGCACGCGAAGATGAAGGCGGAAGAACGGTGGATGTTATGCGTATTATATTGACATATGGACTTGACCCAATTATTGGTTCAGTGGATAACAAACCATCTCTAAATAAAATGGTAAAAGAATCTGTGAGAAGACTGCTGAAAAAGATAGTAGAGTGCAGCACTGAAGAAAAAAACGCTAATTTTCCAGATACCAACGAGGTTGCTGCGGAAGAAATTCATCGGAGTCCACAAGATAAAGGCAAAAAAGATGTTCCAATGAAGCAAGGCGATTGGCTTTGCCCCAATTGCAATTTCCACAACTTCGCTAGAAATATCAAGTGCTTGCACTGTGACAACTTCTGTGAGGAAAAAATCAAGCAATTGAAAGAAGATAACAATCACTTACCTTTGAAGAAGGGAGACTGGATATGCGACAAATGCAACTTCCTCAATTTTGCAAGGAATACAAGATGTTTGCAATGTAAAGAAGGGCCTTCAAATCGTCGCATTAATCCAGGGGAGTGGGCATGCGAGTCGTGCAACTACATCAATTTCAGAAGAAACATGGTTTGCCTTAAATGCGATCATAGAAGACCCAAAGTGTCAAATGCTTCAAACGATTCCCTTCAACCTCAGGGAGAAGATGGCAAAATGAACATTGCTGGATATCGGTTTGATGATAGTAACAAAGAATCGTCAATGGCGTCAGAAAGAAAAATCAGGAAAAGAGATTCACATAAGTGGAGATTTGTAGATGGAATTGAAAATCACAAGTACTTAGAAAACTCAAACGACACTTCAGAAGTTTTAGATTTTCCTATTGCTGGAGGTAAGACTGGCATGTTTCAGACACAAAGGGGAGAAGCCAATAAGAACGAGTCGCCAGATCCCTGCAGAAAGCATTCATGGCAAAGTGAAACCGATGACGAGTTTAGTTCTTCTGATAACTTGAGTACCGATGATGAAGAGATGGCTGAATGGTTTGGAAAGGGTAAGAATGCAAGGTAG 1509 0.3956 MIRNILKKCHHQFHNNPTTTLNGKTLLTSLIHTLSNSNQNEFDESKWKNEQQQQEQNSAFQISHPWPEWVDLMECLLKKGHFHAEGNPFLNPNLGSKESNLIRTACLNFGRDNSHFLRFLSRKDMGVIVTYGCPNLDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGNCERAFVKAREDEGGRTVDVMRIILTYGLDPIIGSVDNKPSLNKMVKESVRRLLKKIVECSTEEKNANFPDTNEVAAEEIHRSPQDKGKKDVPMKQGDWLCPNCNFHNFARNIKCLHCDNFCEEKIKQLKEDNNHLPLKKGDWICDKCNFLNFARNTRCLQCKEGPSNRRINPGEWACESCNYINFRRNMVCLKCDHRRPKVSNASNDSLQPQGEDGKMNIAGYRFDDSNKESSMASERKIRKRDSHKWRFVDGIENHKYLENSNDTSEVLDFPIAGGKTGMFQTQRGEANKNESPDPCRKHSWQSETDDEFSSSDNLSTDDEEMAEWFGKGKNAR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01201 502 MobiDBLite consensus disorder prediction 459 475 - -
Trre1g01201 502 SUPERFAMILY Ran binding protein zinc finger-like 331 367 IPR036443 -
Trre1g01201 502 ProSitePatterns Zinc finger RanBP2-type signature. 265 284 IPR001876 -
Trre1g01201 502 Gene3D - 333 368 - -
Trre1g01201 502 Gene3D - 252 290 - -
Trre1g01201 502 Gene3D - 296 332 - -
Trre1g01201 502 Pfam Zn-finger in Ran binding protein and others 340 362 IPR001876 -
Trre1g01201 502 Pfam Zn-finger in Ran binding protein and others 261 286 IPR001876 -
Trre1g01201 502 Pfam Zn-finger in Ran binding protein and others 305 329 IPR001876 -
Trre1g01201 502 PANTHER ZINC FINGER PROTEIN 41 286 - -
Trre1g01201 502 ProSiteProfiles Zinc finger RanBP2 type profile. 338 367 IPR001876 -
Trre1g01201 502 MobiDBLite consensus disorder prediction 444 502 - -
Trre1g01201 502 SMART zf_4 340 364 IPR001876 -
Trre1g01201 502 SMART zf_4 307 331 IPR001876 -
Trre1g01201 502 SMART zf_4 263 287 IPR001876 -
Trre1g01201 502 SUPERFAMILY Ran binding protein zinc finger-like 298 330 IPR036443 -
Trre1g01201 502 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Trre1g01201 502 SUPERFAMILY Ran binding protein zinc finger-like 253 287 IPR036443 -
Trre1g01201 502 ProSiteProfiles Zinc finger RanBP2 type profile. 261 290 IPR001876 -
Trre1g01201 502 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Trre1g01201 502 ProSitePatterns Zinc finger RanBP2-type signature. 342 361 IPR001876 -
Trre1g01201 502 MobiDBLite consensus disorder prediction 367 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01201 Trre-Chr1 9112330 9114950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01201 55 398 EF-hand Containing Proteins AT1G55040 36.927 6.80e-62 215
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01201 1 9112330 9114950 Trre1g01201 1 9112330 9114950 ECH