Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02637 ATGGCTACTAAGTGCATGCATGTTTTTGATAGATTGATGTTTTCTGTCACTTGTTGGAAGAAAAGTAGGACACAAAGTGGCAGAAGAAAGTTCCATAGGGATGTAGAGAAAGAAGAATTCCAGTATGCAAGTACTCAATGTCTTTCATCCTATTACAGTGTCTTTGTCGTTCGCCTTGCAATCATGGTTATGCTAGCCATCTTGATTGGTCTACTGACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAATCTCTAAATAGTTTGGCTTATGACCTGCGTTACGAACTTCTGCAACGTCCCATCTTGAGGATGTGGAACATTTTGAACTCTACTGCTGAAATCACAACTGCTCAGGTTAAGTTATCCGAGTATGTTATCAGAAGCCACAACAAGCTAGCCACTCAAGAAGATCATGTTGAGATGTATGAAGCCATGAGAGCTGTCACATGGGCACTGTTTTCTAGTCGAAAAGCTCTTAACTCGATAACTGTCAAATATGGAAACGGTTTTGTCCAGGCATTTCATAGAGACTTGAAGGATAATAATACTTTTTACATTTACACTGATCTTGCATATAACGAGACCAGTGAAGCCTTGAATGATAAAGACATTCATAACAACAAGACTGCGATTTGGTACCGGGAACAGCTTGATCCATTTAGTGGCGAGAAGATTGGAAAAGCAATGAAAATTGCACCAGAAGACTCAATAAGTATAGCTGGCATGTCACAAGTACCTGACGGTGTAGCTTCGTGGCACGTTTCTGTGAGCAAGTTTACAGATTCACCGCTACTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATAAGAGTATTGTAGCAGTTGTCGGTGTCACAACAGCGCTTTATAGTGTAGAGCAGTTAATGAAGGAACTAGTTGACAAGCACAGTGGTCATATGTATTTGACCTCTCAAAAGGGATATTTGCTTGCAACTTCCACAAATGACCCTCTACTGACAAATTCAACAAAGAAACCTAAGCTTAAAATGGCTATTGATTGCGATAACGAAGTAATAAGAGAGGGAGCGATGTGGCTACAGAAAACCTATGGGAACAATTTTCCTCCAAGTCATGAGGTTCATGTAGAGAATGCCAAGCTAGGTCACCAGCAATATTACATCGACTCATTCTTCCTAAACTTGAAAAAGCTTCCTCTGGTAGGTGTAATAATCTTACCAAGGAAGCATATCATGGGGCAGGCAGATCAAAGAGCCTTCAAAACATTGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTGGAAGCAAGAAGGAAAGCCGAGGCATCAAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAATTACGGACACCGATGGCAGCAGTAATCGGATTACTTGACATTCTTTTGTCTGATGATTGTCTCACAAATGAACAATATGCAACCATTACTCAAATAAGAAAATGTTCAACCACATTGCTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTAGAATCTGGAAAACTTGTCCTAGAAGATGCAGAATTTGACTTGGGAAAGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGATAGTTCGGGGAGATTCTGATCGAGTTGTTCAAATTTTTGCAAATTTGATCAACAACTCAATCAAGTTTACTCTATCCGGTCACATTATTCTGAGAGGATGGTGTGAAAACCCAAATTCTTATGGTGATAACGAAAGATTTACTGAGGAGCAGAAGAAATTGGTGTCTTCCCAGAAGACCGTAACAAAGCAACATGAAAACCATGCAAAGAAGACTTCTAATAATGATAACAAAACGATACTTTGGTTTGAAGTTGATGATACAGGCTGTGGTATTGACCCAAGTAAATGGGATTCGGTGTTTGAAAGCTTTGAACAAGCTGACCTATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCCGATCCTTGGTGAATAAGATGGGTGGAGAAATTAAGATTGTCAAAAAGGAAGGCCCGGGAACACTAATGCGGTTATACCTGCGACTCACCGCACCTGTGGATGCCGCAGAACAACATTGTCGAGTCGATTTTGCTAACAATAACTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTGATGGACAACAGGCAGTGGATGCTCTAAATGGAACTCTTGGTGTCGAAGATTGTAGAAAAGAGTCTCTCTTAAAGGAAAGGAACAAAGAAACATCTCAAACTGAGATTCTAAGTTTCCCTGCATATGACTTGATCCTTATGGATTGCCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGAAATAAGGAAATCAGAAGTAGGAAGTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGAAGTTGGCATGGATGCTTATTTAACTAAGCCAATTGACTTTAAACTTATGGAGTCTACCATTCTTTCACTCACAAGAGAGAAACCTTAA 2577 0.397 MATKCMHVFDRLMFSVTCWKKSRTQSGRRKFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHNKLATQEDHVEMYEAMRAVTWALFSSRKALNSITVKYGNGFVQAFHRDLKDNNTFYIYTDLAYNETSEALNDKDIHNNKTAIWYREQLDPFSGEKIGKAMKIAPEDSISIAGMSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVEQLMKELVDKHSGHMYLTSQKGYLLATSTNDPLLTNSTKKPKLKMAIDCDNEVIREGAMWLQKTYGNNFPPSHEVHVENAKLGHQQYYIDSFFLNLKKLPLVGVIILPRKHIMGQADQRAFKTLEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLTNEQYATITQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGKELEGLVDMFSVQCINHSVEIILDLSDDMPKIVRGDSDRVVQIFANLINNSIKFTLSGHIILRGWCENPNSYGDNERFTEEQKKLVSSQKTVTKQHENHAKKTSNNDNKTILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIVKKEGPGTLMRLYLRLTAPVDAAEQHCRVDFANNNLVVLLALHGNMSDGQQAVDALNGTLGVEDCRKESLLKERNKETSQTEILSFPAYDLILMDCQMPKMDGYEATKEIRKSEVGSGFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTREKP 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02637 858 Gene3D - 431 510 - -
Trre15g02637 858 SMART REC_2 717 850 IPR001789 GO:0000160
Trre15g02637 858 PANTHER TWO-COMPONENT HISTIDINE KINASE 40 712 - -
Trre15g02637 858 ProSiteProfiles Response regulatory domain profile. 718 854 IPR001789 GO:0000160
Trre15g02637 858 Pfam His Kinase A (phospho-acceptor) domain 444 509 IPR003661 GO:0000155|GO:0007165
Trre15g02637 858 SMART HisKA_10 443 509 IPR003661 GO:0000155|GO:0007165
Trre15g02637 858 SMART HKATPase_4 556 708 IPR003594 -
Trre15g02637 858 Pfam Response regulator receiver domain 771 847 IPR001789 GO:0000160
Trre15g02637 858 CDD HisKA 444 505 IPR003661 GO:0000155|GO:0007165
Trre15g02637 858 CDD REC_hyHK_CKI1_RcsC-like 737 850 - -
Trre15g02637 858 PRINTS Bacterial sensor protein C-terminal signature 668 686 IPR004358 GO:0016310|GO:0016772
Trre15g02637 858 PRINTS Bacterial sensor protein C-terminal signature 692 705 IPR004358 GO:0016310|GO:0016772
Trre15g02637 858 PRINTS Bacterial sensor protein C-terminal signature 651 661 IPR004358 GO:0016310|GO:0016772
Trre15g02637 858 PRINTS Bacterial sensor protein C-terminal signature 633 647 IPR004358 GO:0016310|GO:0016772
Trre15g02637 858 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 498 705 IPR036890 -
Trre15g02637 858 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 556 707 IPR003594 -
Trre15g02637 858 Gene3D - 716 853 - -
Trre15g02637 858 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 430 510 IPR036097 GO:0000155|GO:0007165
Trre15g02637 858 Gene3D - 511 710 IPR036890 -
Trre15g02637 858 SUPERFAMILY CheY-like 777 855 IPR011006 -
Trre15g02637 858 FunFam Histidine kinase 1-like protein 431 510 - -
Trre15g02637 858 ProSiteProfiles Histidine kinase domain profile. 450 708 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02637 Trre-Chr15 22227359 22232978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02637 738 855 Histidine Kinase Gene Family AT2G17820 66.667 3.43e-38 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g02637 HATPase_c 2.9e-22 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02637 15 22227359 22232978 Trre15g02637 15 22227359 22232978 ECH
Trre9g01242 9 10539102 10545404 Trre15g02637 15 22227359 22232978 PCT