Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02323 ATGAACGAGAAAGCCAACGTTTCAAAGGAGCTCAACGCTAAACACAAAAAGATATTGGAAGGACTTCTTAAATTACCAGAGAATAGAGAATGTGCTGATTGTAAAGCCAAAGGACCAAGATGGGCAAGTGTCAATCTTGGCATCTTTATTTGCATGAATTGTTCAGGAATACATCGAAGTCTTGGGGTACATATTTCAAAGGTTCGTTCTGCTACTTTGGACACCTGGCTCCCAGAGCAGGTTGCATTTATTCAATCTATGGGAAATGAGAGAGCAAATAGTTACTGGGAAGCAGAGTTACCCCCAAATTATGATAGAGTTGGTATTGAAAACTTCATTCGTGCCAAGTATGAAGACAAGAGATGGGTTGCAAGGGATGCTAAACCAAAATCACCTTCTAGACTACTAGAAGAGAAAAGTCCTTCACAATGGCAAAAGCCTGTGGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTCCGGCTACTAGAATTAGTGTTCTTGCTCCTCCTAAAGGACATGTGCAGGTAACTCCAGTGGCTAAACACCAGCATATTGAGAAAGTGGAACCTCTGGTGCCACAAGTACAAGCTGAAACATCACAGACGACTGGCACATCTAACAATCCCCCTCCAAAAGTTGACTTTGCTACCGACCTTTTTGACATGTTGTCTATGGATGATCCAAATGAAAAGAGCTCTGACGCAGCTGATGCGTCTGCTGACGATGATAACAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACGTCAACAGCTGAGAAAACTGACACCAGGAAATCGGTTGAGAGTACACCCCAACCCACCTCTGGAATTGAGGATCTATTTAGTGACTCGTCTTCAGTGACACCAAGTTCTACTCTTGAAAAACCACAAAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAAAAGAACAATATAGTATCTCCATTTGCTATGCATCAACAGCAGTTGGCTATGCTGGCACAGCAACAATCTCTTCTAATGGCTGCTGCTGCAGCTAAATCTTCTAGTGGGGATGCCAAATATCCTGCTAATGTACAGCAACCTGGTCTCAATATTCCTATCCAAAATTGGCCAGCTGCGAGCTACCCAATTCCTGGAGTAATGCCCGTGGGTGGCCAGGGAGACCTGCAGAAAATTATGCAGGCAATGAACATGACTTCCGCGCATCCAGCAGAGAGCTCAGTTCAGTATCCACCATCTAGTTATTTTACTATGTCACAAGTTGCTCCAGTTAATGGCACAACGACAACGGCAGCGAGTAACCCTCAGTCAGCTACTCCGGTATCATCGAACAATACAAAGACAGCGAATGATTATGATTTTTCCTCATTAACACAAGGAATGTTTGCGAAACCCTGA 1398 0.432 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMNCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARDAKPKSPSRLLEEKSPSQWQKPVENTFEERKKIQPSNAIPATRISVLAPPKGHVQVTPVAKHQHIEKVEPLVPQVQAETSQTTGTSNNPPPKVDFATDLFDMLSMDDPNEKSSDAADASADDDNNWAGFQSAAETSTAEKTDTRKSVESTPQPTSGIEDLFSDSSSVTPSSTLEKPQKDVKNDIMSLFEKNNIVSPFAMHQQQLAMLAQQQSLLMAAAAAKSSSGDAKYPANVQQPGLNIPIQNWPAASYPIPGVMPVGGQGDLQKIMQAMNMTSAHPAESSVQYPPSSYFTMSQVAPVNGTTTTAASNPQSATPVSSNNTKTANDYDFSSLTQGMFAKP 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02323 465 CDD ArfGap 19 117 - -
Trre15g02323 465 MobiDBLite consensus disorder prediction 127 149 - -
Trre15g02323 465 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Trre15g02323 465 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Trre15g02323 465 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Trre15g02323 465 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Trre15g02323 465 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Trre15g02323 465 MobiDBLite consensus disorder prediction 196 303 - -
Trre15g02323 465 MobiDBLite consensus disorder prediction 229 243 - -
Trre15g02323 465 MobiDBLite consensus disorder prediction 272 300 - -
Trre15g02323 465 MobiDBLite consensus disorder prediction 427 457 - -
Trre15g02323 465 MobiDBLite consensus disorder prediction 199 217 - -
Trre15g02323 465 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Trre15g02323 465 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Trre15g02323 465 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Trre15g02323 465 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 464 IPR044520 GO:0005096
Trre15g02323 465 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02323 Trre-Chr15 19230073 19238431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02323 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 1.40e-29 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02323 15 19230073 19238431 Trre15g02323 15 19230073 19238431 ECH
Trre11g03899 11 52203281 52206969 Trre15g02323 15 19230073 19238431 ECH
Trre7g01344 7 9775784 9778980 Trre15g02323 15 19230073 19238431 ECH