Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03899 ATGGATACCACAATTAACAATAACAAAAATAAGTCTCCATCTACAACAATCCCTTTTCAAGTCAACCACCTTACCTCTTCCAATGACTCTTCTCCTTCACTTTCTGATCATGAAAATCGACCCATCATCAATGAACTTGACTTTTTCTCTCAAAATAATAACCATGAAAACCTTGCCTCTTCTTCCACTTCTGCACCCCCCTATCATCATATACATGATCATTACACCAATCCTTCTTCTCTCTTGGAATTGAAAGTAAACACTAGTTTGAATCTTCTTACCACCAACGCAAGCAATGATCAATCCATGGTGGAGGCTGAGATACCAAGTAATCCAGAAGACAAAAGAGGTCAACATGAGGTGGTTGGTCTTCAAGGTGAGCTTGAGAGATTGAAAGTAGAGAATCATCAACTGAGGAACATGCTTGAAGAGCGCAATCGGAATTACAACACATTGCAGATGCATTTGATGAGTTTGATGCAAGAAAGGAAAGTAGAGGATTGTAATGAAGATAAAAAACAAGAAGTGAAACAAAATGGAAATGGTGGATTTTTGGTTCCAAGGCAATTTATGGATCTTGGATTAGCTACTAATAATTCTAATGTTGCTGCTGATGAACCAAGAAGTCAAGATAAGTCAAAAGCACTTGCAAACAACAATGAAGAAGGTTCCAAGGATGAAGCACTTGTGCCTGATCATGGTATGAAGGAATCTGATAAGGGAAATGAAAGAGACGATAGTCCTCCGAATCGAGTATTAGCTGCTAATAATAGTAATAATGTTCCAAATTTTAGTCCTCAAACTAATGTTGAACAAGCTGAGGCCACTATGAGGAAAGCAAGAGTTTCTGTTCGATCTCGATCGGAGGCTGCTATGATCAATGATGGATGTCAATGGAGAAAATATGGACAGAAAATGGCGAAAGGAAACCCGTGTCCTCGAGCTTATTATCGATGTACCATGGCTCACGGCTGTCCCGTGAGAAAACAGGTACAACGATGTGCTGAAGACAGATCAATACTCATAACAACATATGAAGGAAACCACATTCATGCATTGCCACCAGCAGCAATGGAAATGGTACAAACAACATCAGCAGCAGCAAGAATGCTTTTATCAGGACCAATGACAAGTCCTGATGGCTTAATGAATCCAAATTTCCTCACAAGAGCAATTCTTCCTTATTCATCAAGCATAGCAACTATCTCAGCCTCGGCGCCATTTCCAACTGTTACATTAGACTTAACCGAGCCACCGAATTCAAACCAGTTCCCTAACAATAAGAACACAAACCAATTCCAATTTCCGTTCGCTCAAAATTTCGCAAACTCATTACTACCTCACATATTTGGTCAAACATTGCTTAACCAATCAACATTTTCAGGACTACAAATGTCTCAAGATGCAGAAAATTCTCAATTGGGTAATCAATCTCAGCAACAACTTGCTGATACAGTTACTGCTATTGCATCTGATCCTAACTTTACTACAGCTTTGGCAGCAGCTATTACTTCCATTATTGGTGCTGCACAACCAAACAATGGTAACAACAACAGTACTATTAATAATGGTAACAGTACTATAGCCAACAATAATAATGGCAATGTTACAACTAATAACAATGCCAATGGAAGCAATAAAGCCAACAATCCCAATTCATCAGGAAACTAG 1671 0.389 MDTTINNNKNKSPSTTIPFQVNHLTSSNDSSPSLSDHENRPIINELDFFSQNNNHENLASSSTSAPPYHHIHDHYTNPSSLLELKVNTSLNLLTTNASNDQSMVEAEIPSNPEDKRGQHEVVGLQGELERLKVENHQLRNMLEERNRNYNTLQMHLMSLMQERKVEDCNEDKKQEVKQNGNGGFLVPRQFMDLGLATNNSNVAADEPRSQDKSKALANNNEEGSKDEALVPDHGMKESDKGNERDDSPPNRVLAANNSNNVPNFSPQTNVEQAEATMRKARVSVRSRSEAAMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAHGCPVRKQVQRCAEDRSILITTYEGNHIHALPPAAMEMVQTTSAAARMLLSGPMTSPDGLMNPNFLTRAILPYSSSIATISASAPFPTVTLDLTEPPNSNQFPNNKNTNQFQFPFAQNFANSLLPHIFGQTLLNQSTFSGLQMSQDAENSQLGNQSQQQLADTVTAIASDPNFTTALAAAITSIIGAAQPNNGNNNSTINNGNSTIANNNNGNVTTNNNANGSNKANNPNSSGN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03899 556 SUPERFAMILY WRKY DNA-binding domain 286 354 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g03899 556 MobiDBLite consensus disorder prediction 218 247 - -
Trre11g03899 556 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 92 523 IPR044810 GO:0003700
Trre11g03899 556 SMART WRKY_cls 293 353 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g03899 556 MobiDBLite consensus disorder prediction 510 556 - -
Trre11g03899 556 FunFam probable WRKY transcription factor 31 278 355 - -
Trre11g03899 556 MobiDBLite consensus disorder prediction 1 38 - -
Trre11g03899 556 Pfam WRKY DNA -binding domain 294 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g03899 556 MobiDBLite consensus disorder prediction 201 272 - -
Trre11g03899 556 Gene3D WRKY domain 278 355 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g03899 556 MobiDBLite consensus disorder prediction 251 272 - -
Trre11g03899 556 ProSiteProfiles WRKY domain profile. 288 354 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g03899 556 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03899 Trre-Chr11 52203281 52206969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03899 86 518 WRKY Transcription Factor Family AT1G62300 49.448 1.34e-121 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre11g03899 WRKY 1.4e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03899 11 52203281 52206969 Trre11g03899 11 52203281 52206969 ECH
Trre11g03899 11 52203281 52206969 Trre15g02323 15 19230073 19238431 ECH
Trre11g03899 11 52203281 52206969 Trre7g01344 7 9775784 9778980 PCT