Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g4317 ATGTCCAAAACCATGCAACAACCAGGCTCTGGTTCTCTGCGTTGCGACCACAGTAAGCCAGATTCTAAACCACTCGATCTGAACGGTTCTACAGTCAAAACCGCCGCACATAAACTCCCACGCGGCGGAAAAGCCATCTGCCGTTCCGAAGAACTAACCACCGCACCGGCGAAAATTTCGAAGCCAGGTCATCGGAGAACAGTTTCCGACGGAGCTCCGTTAATATACTCCGGCGGTAATTTGTTACCGACCGGAAACATTTGTCCATCGGCGAAGATCCTTAGACCGGGTTTACCTTCTCGTGGACCGAACCGGACCGATGTTTTGGGTTCCGGAACCGGAAACTACGGTCACGGAAGTATAATGCGTGGTTCTGGAGGATCAAATCATGTGGCTGCCGGTGCACCGGTTACGGTGAAACGTGCGATGAGTGGTTTTGATTCGGAGGAAGTGAAGAGAGTTGGAAATGAGATGTATAGGAGTGGTAATTTTGTGGATGCTTTGGCATTGTATGATCGTGCTGTTTATTTGATGCCGGGAAATGCCGCTTACCGGAGTAACCGTGCCGCGGCGCTTACGGCATTGGGAAGGTTGAGTGAAGCCGCTAGGGATTGTATTGAGGCTGTCAAGTTGGATAATGGTTATGCTAGGGCCCACAATAGACTTGCTTCTCTTTATTTCCGTTTTGGGCAAGTTGAGAATTCGCGGCGACACCTTGTTTTAGCTGGCCTGCAGGATGATCAATCGGAAGAGAAGAAGTTGTTGTTGTTGGAGAAGCATCTGAATCAATGTGCGGATGATCGGAAGAAAGGTGAATGGGAAAGGTTAATAAGGGAAGTAGATGCTGCTGTTGCGGTTGGAGCGGATTTTTCACCTCAGCTTGTGGCTTGTAAAGCGGAAGCTTATTTGAAACTTCATCGACTTGACGATGCTGAATCTTGTCTTTCAAACATTCCCAAGTTGGAAGGTTGTCCTCCAGCATGTTCTCAAGCCAAGTTCTTTGGTATGGTTGGTGAAACATTTGTGCATTTTGTCTCGGCGCAGGTTGATATGGCCTTAGGAAGGTTTGAGAATGCTGTCGCCGCAGCTGAAAAGGCCAGCTTTTTAGATAGTAGTAATGACGAAGTTGCTACAATTTTAAATGTCGTGGAAATGGTGGCGATGGCGCGTTCAAGGGGCAATACTCTTTTCAGCTCTGGCAAATATAAAGAAGCTCATGATGCTTATCGAGAAGGCCTCAAATATGACGATTCTAACTCTGTTCTATATTGCAATAGAGCTATTTGTTGGTTTAAACTCGAACAATGGGAAAAATCAATTAAAGAGTGCAACAAAGCTCTTAGCTTTCGCCCAAATTACACCAAGGCTCTTTTGCGTAGGGCCGAGTCTAACGAAAAGCTTGAAATATGGGCCGAAGTTGTTAAAGATTATCAGGCCTTGAAACAAATACTCCCTAATGACAATGATGTTGCTGATTCTCTTCGGCGGGCTCTACGAGCATTGGAAAAATCTCGTAGAGTCGTAAACGGTACTAAGTTTGGAGTTGAAGTTGAAGTTGAAGAAATCACTGCATTAGATAAATTTAAAGCTGCTATTGCTTATGCTGGTGTTTCGGTAGTTCATTTTAAAGAGGCACCAAATGAACTTTGTGAAGAAATATCTCCATTCATAAATACATTATGTCTTAGATATCCCTCTATTAAATTTATCAAGGTGGATGTCGAGGAGTGTCTAGCGATAGCGAAAGCAGAAAGCATAAGAAGCGTTCCAACTTTTAAGATTTATAAAAACGGAGAGAAAGTGAAGGAGATGATTCGCCCTACCCTTCAATTCTTAGAGGACTCGGTAAAGAAAAGTAACTGTCTATAG 1869 0.4452 MSKTMQQPGSGSLRCDHSKPDSKPLDLNGSTVKTAAHKLPRGGKAICRSEELTTAPAKISKPGHRRTVSDGAPLIYSGGNLLPTGNICPSAKILRPGLPSRGPNRTDVLGSGTGNYGHGSIMRGSGGSNHVAAGAPVTVKRAMSGFDSEEVKRVGNEMYRSGNFVDALALYDRAVYLMPGNAAYRSNRAAALTALGRLSEAARDCIEAVKLDNGYARAHNRLASLYFRFGQVENSRRHLVLAGLQDDQSEEKKLLLLEKHLNQCADDRKKGEWERLIREVDAAVAVGADFSPQLVACKAEAYLKLHRLDDAESCLSNIPKLEGCPPACSQAKFFGMVGETFVHFVSAQVDMALGRFENAVAAAEKASFLDSSNDEVATILNVVEMVAMARSRGNTLFSSGKYKEAHDAYREGLKYDDSNSVLYCNRAICWFKLEQWEKSIKECNKALSFRPNYTKALLRRAESNEKLEIWAEVVKDYQALKQILPNDNDVADSLRRALRALEKSRRVVNGTKFGVEVEVEEITALDKFKAAIAYAGVSVVHFKEAPNELCEEISPFINTLCLRYPSIKFIKVDVEECLAIAKAESIRSVPTFKIYKNGEKVKEMIRPTLQFLEDSVKKSNCL* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g4317 622 SUPERFAMILY TPR-like 390 503 IPR011990 GO:0005515
Tpr7g4317 622 SUPERFAMILY Thioredoxin-like 511 618 IPR036249 -
Tpr7g4317 622 CDD TRX_family 528 607 - -
Tpr7g4317 622 ProSiteProfiles TPR repeat profile. 386 419 IPR019734 GO:0005515
Tpr7g4317 622 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 49 618 IPR044534 -
Tpr7g4317 622 Gene3D Tetratricopeptide repeat domain 147 504 IPR011990 GO:0005515
Tpr7g4317 622 Gene3D Glutaredoxin 505 622 - -
Tpr7g4317 622 ProSiteProfiles TPR repeat profile. 148 181 IPR019734 GO:0005515
Tpr7g4317 622 SUPERFAMILY TPR-like 149 373 IPR011990 GO:0005515
Tpr7g4317 622 Pfam Thioredoxin 525 605 IPR013766 -
Tpr7g4317 622 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 49 618 - -
Tpr7g4317 622 SMART tpr_5 386 419 IPR019734 GO:0005515
Tpr7g4317 622 SMART tpr_5 182 215 IPR019734 GO:0005515
Tpr7g4317 622 SMART tpr_5 420 453 IPR019734 GO:0005515
Tpr7g4317 622 SMART tpr_5 340 373 IPR019734 GO:0005515
Tpr7g4317 622 SMART tpr_5 148 181 IPR019734 GO:0005515
Tpr7g4317 622 SMART tpr_5 454 487 IPR019734 GO:0005515
Tpr7g4317 622 SMART tpr_5 216 249 IPR019734 GO:0005515
Tpr7g4317 622 Pfam Tetratricopeptide repeat 392 452 - -
Tpr7g4317 622 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g4317 Tpr-Chr7 51945254 51948709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g4317 160 278 Glycosyltransferase AT3G04240 32.258 2.47e-06 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2022 7 25045053 25048431 Tpr7g4317 7 51945254 51948709 PCT