Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g3460 ATGTCACATTCACCAGAAAAACCCGACTCAGAAAAACCCGAACCGGAGTTAGAATCTTTTTCCGATCGGTTTCGTGAAACGGTGAGTTTAGAAGTAAATAAACCGGATTTCAGAGAACTCGATCTGGGTTCACCGGTTTCACCATTGAGGACACGTGGAGGACCGTCGGTGAGTAGTAGTTCGGGTTCTTCTGGATCTTTCTCTGGTCGAAATGGGTCAAATTCAAACCCGGTTTCTAAAAGATCCGATTCAGCACCGAATAATAATAACAGTAACTCCGGTGAACTTTCCGGTTCTAGTGAGAACAGTCCAACGGCAGAGAGATCTGGTGGGAATGTAAGAGGTTCTAAACCGGGTCATTCAAGATCCAATTCAGGATCCGGTTTGACTTCGTTGACGCATTCGGGTCAAACTGTGAACTCTCCACCGTTGAATGTTCTTCCCACCGGAAACATTTGTCCTTCCGGTAGGATCTTGAAGACCGGTATGATGGTACCTAATCGGAGTTCAAGAAGTGATGTTCTTGGTTCTGGAACTGGAAACTATGGTCATGGTAGCATAATGCGCGGTGGAGGTGGTGGTGCCGGAGTAGTTTCTGGTAAAGGAGAGAGTAACAGTTTGAGAAGTAGCATTGGGGGTGATTTAGGAAAAAGAGGGGTGCAGGGTGTGGATCCAGAAGAGCTTAAGAAAGCAGGAAATGAGCATTACAAAAAAGGTCATTTTTCAGATGCATTGAGTTTTTATGACCGTGCAATTTCGTTGTCTCCAACGAGTGCTTCTTATCGAAGCAACCGTGCCGCGGCCCTGACTGGTTTAGGGAGGTTAGCTGAAGCTGTCAAGGAATGTCAGGAGGCTGTTAGATTGGATCCTAGTTATTCTAGAGCTCATCATCGTTTGGCTTCTCTTTACATCAGGTTAGGACAAGTTGAAAATGCTAGGAAGCATCTTTGTCATCCTGGATTGACGCCAGATCCGGCGGAGATGCAAAAGTTGAAAATGGTGGAAAAGCATATTAATAAATGTGCAGATGTTAGGAGGGTAGGAGATTGGAAAAGTGTTCTGAGGGAACTTGGTGCTACTGTTGCTGCTGGAGCCTATTCTTCTCCGCAGCTCTTTATGTGTAGAGCAGAAGCCCTATTGAAACTCCATCAAATTGATGATGCAGAATCAGTTTTGTCACATGTTCCGAAATCGGAGCCTCGTACTAATAGTAATAATACATCTTCTCAAGTAAGATTTTTCGGGATGCTTTCTGAAGCTTATTCCTACTTTGTCAGAGCTCAAATTGAGATGGCATTGGGAAGGTTTGAGAATGCAGTCACGGCTGCTGAGAAGGCGAGTCAGATTGATTCGCGAAATCTTGAAGTTGCTGTTTTGCTTAACAATGTAAGGATGGTGGCAAGAGCTCGAGTTCGTGGCAATGATCTTTTTAAATCGGAACGGTTCACTGAAGCTTGCTCGGCATACGGGGAAGGTTTGAGATTGGACCCTTCAAATTCTGTTCTATATTGCAATAGAGCAGCGTGTTGGTTTAAGCTTGGTCAATGGGAAAAATCAATTGAAGACTCTAATCAAGCATTAAGTATTCAACCAAGTTATACAAAAGCTCTTCTTCGAAGAGCGACATCATACAGCAAGCTAGAAAGGTGGGAAGAAGCGGTTAAAGATTATGAGGTCTTGCGGAAAAACCTTCCAAATGACAATGCGGTTGCTGAAGCTCTTTTTCATGCGCAAGTTGCGCTTAAGAAATCTCGTGGAGAAGAAGTATCTAATTTAAAGTTCGGCGGTGAAGTGGAAGTAGTATCAGGTCTTGAGCAGTTTAGAACTGCAATATCTTTACCTGTTGTTTCTGTTGTCCATTTTGAAGTTGCATCAAATTCGCAATGCAAGCAAATATCTCCATTTGTGGATACACTATGTAGTCGATATCCATCTATTAACTTCCTCAAGGTGGACATTCAAGAAAACCCGACAGTTGCAACTGCTGAGAACGTTAGAATCGTGCCAACTTTCAAGATATACAAAAACGGAAGCCGTGTGAAGGAAATCATATGCCCTAGTCGTGACATGTTGGAACACTCCGTGAGGCATTACAGCATTTAG 2103 0.4356 MSHSPEKPDSEKPEPELESFSDRFRETVSLEVNKPDFRELDLGSPVSPLRTRGGPSVSSSSGSSGSFSGRNGSNSNPVSKRSDSAPNNNNSNSGELSGSSENSPTAERSGGNVRGSKPGHSRSNSGSGLTSLTHSGQTVNSPPLNVLPTGNICPSGRILKTGMMVPNRSSRSDVLGSGTGNYGHGSIMRGGGGGAGVVSGKGESNSLRSSIGGDLGKRGVQGVDPEELKKAGNEHYKKGHFSDALSFYDRAISLSPTSASYRSNRAAALTGLGRLAEAVKECQEAVRLDPSYSRAHHRLASLYIRLGQVENARKHLCHPGLTPDPAEMQKLKMVEKHINKCADVRRVGDWKSVLRELGATVAAGAYSSPQLFMCRAEALLKLHQIDDAESVLSHVPKSEPRTNSNNTSSQVRFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDSRNLEVAVLLNNVRMVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALSIQPSYTKALLRRATSYSKLERWEEAVKDYEVLRKNLPNDNAVAEALFHAQVALKKSRGEEVSNLKFGGEVEVVSGLEQFRTAISLPVVSVVHFEVASNSQCKQISPFVDTLCSRYPSINFLKVDIQENPTVATAENVRIVPTFKIYKNGSRVKEIICPSRDMLEHSVRHYSI* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g3460 700 Pfam Tetratricopeptide repeat 536 566 IPR019734 GO:0005515
Tpr7g3460 700 SUPERFAMILY TPR-like 225 455 IPR011990 GO:0005515
Tpr7g3460 700 Pfam Thioredoxin 606 688 IPR013766 -
Tpr7g3460 700 MobiDBLite consensus disorder prediction 1 38 - -
Tpr7g3460 700 Pfam Tetratricopeptide repeat 231 292 - -
Tpr7g3460 700 MobiDBLite consensus disorder prediction 51 148 - -
Tpr7g3460 700 CDD TRX_family 605 692 - -
Tpr7g3460 700 MobiDBLite consensus disorder prediction 1 151 - -
Tpr7g3460 700 MobiDBLite consensus disorder prediction 193 223 - -
Tpr7g3460 700 Pfam Tetratricopeptide repeat 294 316 IPR019734 GO:0005515
Tpr7g3460 700 Pfam Tetratricopeptide repeat 421 451 IPR019734 GO:0005515
Tpr7g3460 700 Gene3D Glutaredoxin 593 699 - -
Tpr7g3460 700 SMART tpr_5 466 499 IPR019734 GO:0005515
Tpr7g3460 700 SMART tpr_5 259 292 IPR019734 GO:0005515
Tpr7g3460 700 SMART tpr_5 500 533 IPR019734 GO:0005515
Tpr7g3460 700 SMART tpr_5 369 402 IPR019734 GO:0005515
Tpr7g3460 700 SMART tpr_5 225 258 IPR019734 GO:0005515
Tpr7g3460 700 SMART tpr_5 420 453 IPR019734 GO:0005515
Tpr7g3460 700 SMART tpr_5 534 567 IPR019734 GO:0005515
Tpr7g3460 700 ProSiteProfiles TPR repeat profile. 225 258 IPR019734 GO:0005515
Tpr7g3460 700 SUPERFAMILY Thioredoxin-like 503 698 IPR036249 -
Tpr7g3460 700 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 21 698 IPR044534 -
Tpr7g3460 700 Gene3D Tetratricopeptide repeat domain 223 586 IPR011990 GO:0005515
Tpr7g3460 700 ProSiteProfiles TPR repeat profile. 500 533 IPR019734 GO:0005515
Tpr7g3460 700 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 21 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g3460 Tpr-Chr7 42897683 42901830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g3460 465 610 U-box Gene Family AT3G07370 30.055 2.02e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g3460 7 42897683 42901830 Tpr7g2022 7 25045053 25048431 PCT