Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g2054 ATGGAAGCTAGGAGTATTGAGAGGAAGAGAACATTGATGATGGAAAAGGTGAGAAGGAACAACACAGTGGAAGAAGAAGTGGAAAATGAAGTAGAAGAAGAGGATGGTGATTTCAGTCTGACTGAAGAAGAGAAGAAGAAAGGGGCCGGTGGCGGAAGAAGAGGAGGTTCTGGCGGCGGTGGTGTTTCTCCACCTTCCTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACCGATGCAAAGAGATACCATCGTCGCCATAAGGTGTGTGAGTTTCATTCTAAGGCACCTGTTGTGGTGGTTTCTGGGCTGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACCTAGCAGAGTTCGATGAATCTAAAAGAAGCTGTCGCAGGCGGTTGGCTGGACACAATGAAAGGCGCAGGAAAACCAACCCTGAAACTGCCAATGAGGGCAGCAGCCACAGCAAAGGACAACAACATCAACCTAAGGAAACACAGTGCAGAATTCAGATGAACTTACCAGGGAGTTCTGGCTACAAGTCATTCAATATTAGGTGA 552 0.4801 MEARSIERKRTLMMEKVRRNNTVEEEVENEVEEEDGDFSLTEEEKKKGAGGGRRGGSGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVSGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNPETANEGSSHSKGQQHQPKETQCRIQMNLPGSSGYKSFNIR* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g2054 183 MobiDBLite consensus disorder prediction 131 183 - -
Tpr7g2054 183 MobiDBLite consensus disorder prediction 146 183 - -
Tpr7g2054 183 Pfam SBP domain 67 140 IPR004333 GO:0003677
Tpr7g2054 183 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Tpr7g2054 183 Coils Coil 13 34 - -
Tpr7g2054 183 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 161 - -
Tpr7g2054 183 SUPERFAMILY SBT domain 65 145 IPR036893 GO:0003677|GO:0005634
Tpr7g2054 183 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Tpr7g2054 183 MobiDBLite consensus disorder prediction 16 68 - -
Tpr7g2054 183 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 29 161 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g2054 Tpr-Chr7 25692517 25693982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g2054 1 183 SBP-box Gene Family AT3G15270 46.774 1.59e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr7g2054 SBP 9.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g2054 7 25692517 25693982 Tpr2g2355 2 28393325 28395813 ECH
Tpr7g2054 7 25692517 25693982 Tpr3g1947 3 17548765 17552093 ECH
Tpr7g2054 7 25692517 25693982 Tpr7g2054 7 25692517 25693982 ECH