Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr7g1990 ATGGATCTTCTGTGCGACGCTTATTCGAATTCCTCAGATGAAGATGAAGAAGAAGAAAAAGAAAAACCCAAGCGACAGAAATTTTCCCACAGTTTCTCAAACCCACCAAAACCCTATCTCCCTTCTCCTTCTCCTCCTTCCAACCTCCATACACAAGCTCTCATTCCAGGTAGCTACGTTTCCAAACGACAACGCGCATCTATGGCTTCCATCACTACTCCCCACTCTGTTCCCCTTTCATCATCTTCCTTCACACTCTCTGGGAGTATCTCGGATGCTGATATACCCCATAACATTGTAGCATTGTTGAAAAGTAAAGCAAATGGTCATAAAAACCTGAACTTGGTACCTGACAAGCTATCTGCAACTCTATCTGGACATACAAGAGCTGTCAATGCTATACATTGGTCATCAACTCATGCTCACCTCCTTGCATCTGCTGGGATGGACAATACCATTTGTATATGGAACGTATGGAGCAGAGATAAGAAGAAAGCATGTGTGCTAAACTTCCACAATGCTGCAGTGAAAGATGTAAAGTGGTCTCAACAGGGGCACTTCATGATTTCTTGTGGGTATGATTGCACATCAAGGTTGGTTGATGTTGAAAAGGGGATGGAAACCCAGGTTTTCAGAGAAGACCAAATGGTTGGAGTTATAAAATTCCACCCAGACAATTCAAACCTCTTCCTTTCTGGGGGATCAAAGGGACATATTAAACTATGGGATATCAGAACTGGAAAAGTTGTGCATAACTACAATCGAAATTTAGGATCTATTCTAGATGTTGAATTTACAATGAATGGGAAGCAATTCATTTCTTCTAGTGATGTATCTGGGAGTAATATCAGTGAGAATTCGATTATTGTTTGGGATGTGGCAAGACAGGTACCATTGTCTAATCAGGTTTATGTGGAAGCTTATACTTGCCCCTGTGTTAGACGGCACCCCTTTGATCCAGTTTTTGTTGCGCAGTCTAACGGGAATTATATTGCAATCTTTGGTACAACCTCACCGTACAGACTCAACAAATATAAGAGATATGAGAACCATGGAGTTTCTGGGTTCCCAATTAAGTGCAATTTCAACTTGGATGGGAAGAAGCTTGCATCTGGCTCTTCAGATGGATCTATTTACCTTTATGATTATCAGTCCTCCAAAGTTTTGAAGAAAATAAAGGCCTTTGATCAAGCATGCTTGGACATTGCCTTTCACCCAGTTATGCCTAATGTTATTGCTTCATGCTCATGGGATGGAAGTATTTTGGTATTTGAGTAG 1278 0.4116 MDLLCDAYSNSSDEDEEEEKEKPKRQKFSHSFSNPPKPYLPSPSPPSNLHTQALIPGSYVSKRQRASMASITTPHSVPLSSSSFTLSGSISDADIPHNIVALLKSKANGHKNLNLVPDKLSATLSGHTRAVNAIHWSSTHAHLLASAGMDNTICIWNVWSRDKKKACVLNFHNAAVKDVKWSQQGHFMISCGYDCTSRLVDVEKGMETQVFREDQMVGVIKFHPDNSNLFLSGGSKGHIKLWDIRTGKVVHNYNRNLGSILDVEFTMNGKQFISSSDVSGSNISENSIIVWDVARQVPLSNQVYVEAYTCPCVRRHPFDPVFVAQSNGNYIAIFGTTSPYRLNKYKRYENHGVSGFPIKCNFNLDGKKLASGSSDGSIYLYDYQSSKVLKKIKAFDQACLDIAFHPVMPNVIASCSWDGSILVFE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr7g1990 425 SMART WD40_4 117 157 IPR001680 GO:0005515
Tpr7g1990 425 SMART WD40_4 204 243 IPR001680 GO:0005515
Tpr7g1990 425 SMART WD40_4 343 382 IPR001680 GO:0005515
Tpr7g1990 425 SMART WD40_4 385 425 IPR001680 GO:0005515
Tpr7g1990 425 SMART WD40_4 246 292 IPR001680 GO:0005515
Tpr7g1990 425 SMART WD40_4 162 201 IPR001680 GO:0005515
Tpr7g1990 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 124 158 IPR001680 GO:0005515
Tpr7g1990 425 SUPERFAMILY WD40 repeat-like 114 424 IPR036322 GO:0005515
Tpr7g1990 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 391 IPR001680 GO:0005515
Tpr7g1990 425 MobiDBLite consensus disorder prediction 1 47 - -
Tpr7g1990 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 124 158 - -
Tpr7g1990 425 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 425 - -
Tpr7g1990 425 Gene3D - 101 425 IPR015943 GO:0005515
Tpr7g1990 425 Pfam WD domain, G-beta repeat 120 157 IPR001680 GO:0005515
Tpr7g1990 425 Pfam WD domain, G-beta repeat 220 243 IPR001680 GO:0005515
Tpr7g1990 425 Pfam WD domain, G-beta repeat 358 382 IPR001680 GO:0005515
Tpr7g1990 425 Pfam WD domain, G-beta repeat 169 199 IPR001680 GO:0005515
Tpr7g1990 425 ProSitePatterns Trp-Asp (WD) repeats signature. 144 158 IPR019775 -
Tpr7g1990 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 210 252 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr7g1990 Tpr-Chr7 24359228 24375452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr7g1990 119 381 U-box Gene Family AT1G04510 22.744 9.35e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g1990 7 24359228 24375452 Tpr7g1990 7 24359228 24375452 ECH