Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1947 ATGGAGACAAGAAGGTCAGAGGGCAAGAGGAGTTTGAGGTACAAAGAAGAAGATGAGGAAGAAGACGAAGAAGATATGGATTTTGAAGAGGAAGAAGATGGTAGAAGGAAGAGGGTAGTGACAGATCTCTATAGCAACAAGAGAGGTTCTAACAAAGCTGGTGGTAGCTCAAATATTACACCTTGTTGTCAAGTTGAGAATTGTGATGCTGATCTGAGTGAAGCTAAACAGTATCACCGGAGACATAAGGTTTGTGAGTATCATGCTAAGGCACCTGCCGTACACATTGTAGGGATGCAGCAAAGGTTTTGTCAGCAATGTAGCAGATTCCACGAGCTATCCGAATTTGATGACACAAAAAGGAGTTGTAGAAGGCGTTTGGCCGGGCATAATGAAAGGCGTCGCAAAAATGCAAGTGATTATCAAGGAGAATAA 435 0.4276 METRRSEGKRSLRYKEEDEEEDEEDMDFEEEEDGRRKRVVTDLYSNKRGSNKAGGSSNITPCCQVENCDADLSEAKQYHRRHKVCEYHAKAPAVHIVGMQQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNASDYQGE* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1947 144 MobiDBLite consensus disorder prediction 1 40 - -
Tpr3g1947 144 SUPERFAMILY SBT domain 61 140 IPR036893 GO:0003677|GO:0005634
Tpr3g1947 144 Gene3D - 54 124 IPR036893 GO:0003677|GO:0005634
Tpr3g1947 144 PIRSF SBP 1 144 IPR017238 GO:0003677|GO:0003700|GO:0009908
Tpr3g1947 144 Pfam SBP domain 63 136 IPR004333 GO:0003677
Tpr3g1947 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 138 IPR044817 GO:0003677
Tpr3g1947 144 MobiDBLite consensus disorder prediction 1 16 - -
Tpr3g1947 144 Coils Coil 12 32 - -
Tpr3g1947 144 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 17 138 - -
Tpr3g1947 144 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1947 Tpr-Chr3 17548765 17552093 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1947 1 140 SBP-box Gene Family AT2G33810 59.155 6.42e-44 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr3g1947 SBP 1.1e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1947 3 17548765 17552093 Tpr3g1947 3 17548765 17552093 ECH
Tpr2g2355 2 28393325 28395813 Tpr3g1947 3 17548765 17552093 ECH
Tpr7g2054 7 25692517 25693982 Tpr3g1947 3 17548765 17552093 ECH
Tpr3g1947 3 17548765 17552093 Tpr2g2355 2 28393325 28395813 PCT