Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1393 ATGATTGCAAATAAAGATCTTCGTAATGGTGTTGCTGACTCTGATGGTGAAACCTCCAGGAACAAGTTTTCAAGACCCAATTTTGAGCCTAACAAACGTTACCCAGATGACAAAGATGTTGTTTTTCTCAGAGATTCACATATGGGTGCTGGTGCTTCTGCTTTTGGTGGCCAAGAACTAACCCTCAGCTATCTCTGTGGAAACCAAAAATTGAATCTTGCTGAAAAAGAGATTCATGGTGAAAGCTTTCTGATGAGTCAAAAGGGTAAAGAGGTTATGGTTTCTGAGAATTCAAATCAAGATGGAAAATGGGTTGAAAGAGATTTTCTTAGTTTGAGTGAAACAAGAGAGGATTCTTCAAAGAGATCTGTTGAAGAAGATGTTGAAAGAGAAAATATTAGAGATAAAAAACCAAAGCTTGAGACTTTGAATCTCTCTCTTGCTTTACCTGATGTTTCTCTTTCTCTTACTGCTTCAAACGCTGTACACAACAATGGTGATCAACAACATCAAGTAGTTAGAGCAAAATCTAACAGGCCTTCAACTACACACACTTCATATTCAAATGATTATACAGCACCTTCTTTGTCTTATTCTTATTCACACCAATTTTCACATAATCCAAGTTGTTCATTAACTCGCAATTCGACCGATAATTTTGATTATTCTGTTAGCAAAGATGATCAAATTTGGAATTGTGGTGAAGGGACTAATGGTTCTGTTCATAGCAGGTTTAAACCAATTGGAGATGGTGTTGTTGCTTTGTCAAATCATGGTGGTGGTGGAACTAGTCTTAGTTCATTCATGCAGCAAGGTAATAATACTAGTTCAGAAAATCATTCTTTTTTTCCTTCTGAATTGCCTGCTAGACCTAGATTTGAAGCTCATTCAGGGGATTCTAGGGGAAGGAATTCTGAGAATATGAGAGTGTTTGAAGGTTTAGATGGTGGTAAGATGAGGAATGTTTCAAGAGCAGAGAGAATTGTTAGGGAGATTGTTTCCGAATCTATCCCTATTGTTTCAATGACAATTCAAGAGCTTACCGATGAAGTTGTAGCTTCAATGAAGGAATATTTGAAGAATCTGATTGAGAATAAGAAAGAAGAATTGGTCGGCCTTCAAAACCGGCTTGAGAGAAGGTCTGATCTTACCGAGGAGACTCTTTCGAAGTGTAATAAAGTTCAGCTAGAGATTTTAGTTGCTGTCAAGATGGGACTGTCGAGCTTCTTATACGGTAATCTTCAATTATCTGAGATGGTAGAGGTTTACTTGTATAGGAGATGTAGGAATGTTACTTGTAAGAGTTTGCTTCCTGTTGATGACTGTGACTGTAAGATTTGCTTGGGAAATAAAGGGTTTTGTAGTTCTTGTATGTGTCCTATTTGTTTGAACTTTGATTGTGCAAACAACACTTGTAGTTGGATTGGATGCGATGTTTGTTCACACTGGTGCCACGCTGTTTGTGGCATCCAGAAGAAGCTCATCAAGCCAGGACCAAGTTTGAAGGGTCCTTCTGGTACCTCGGAAATGCAGTTTCATTGTATTGGATGTGGACATGCCTCGGAGATGTTTGGATTTGTCAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGAGTTGAAACCTTGTTGAAAGAGCTTGACTGTGTGAGGAGGATTTTCATGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAAACCGATGACTTGCTATTAAAGCTTCAAACTAAAATAGTATCTCCTTCAGATGCCTGCAATTACATCGTGCAATTTTTCAACTATGCTGAAAACATGGCAAACTTTCCGGTTCCAGCCTCTGGTTTTTCTTCAAAGGAATTGATAGCCTCTCAAGCCAACCATCCAAAGGACATACTATCTCTTCCGAAATCTAGTTCTTCAATACCAAAATACGCTTACGACTCGAGCTATTCTAGGCCACATTCCAATGCCCCGTCAAAAGATCTTCATCAAAAAGACCTCAAAGCTTCCATCTTAAGTGAACTAAAAAATGACGCTGATCTTCAATTGGCGGCTTTACTAAGCAAAGGTGGAATTGAAAGTTTGGAGAGCATTGTTCGGATAAAGGAGGCAGAAGCCAAAATGTTCCAAACCAAGGCAGATGAAGCGAGGAGAGAGGCTGAAGGGTTCCAAAAGATGGTCAGAACAAAGACTGCACAGATGGAAGAGGAGTATGCGACAAAGCTTTCGAAACTATGTCTGAATGAGACCGAGGAATCGCAGAGGAGGAAATTGGATGAGCTGAAAGTTGTGGAAAATTCCTATATTGATTACTTTAAAATGAAAAAGAGAATGCAAGATGAGATTGATGGTTTGTTGCAGAGAATGGAGGCAACAAAGCAGCATTGGGTTTAA 2379 0.3918 MIANKDLRNGVADSDGETSRNKFSRPNFEPNKRYPDDKDVVFLRDSHMGAGASAFGGQELTLSYLCGNQKLNLAEKEIHGESFLMSQKGKEVMVSENSNQDGKWVERDFLSLSETREDSSKRSVEEDVERENIRDKKPKLETLNLSLALPDVSLSLTASNAVHNNGDQQHQVVRAKSNRPSTTHTSYSNDYTAPSLSYSYSHQFSHNPSCSLTRNSTDNFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVVALSNHGGGGTSLSSFMQQGNNTSSENHSFFPSELPARPRFEAHSGDSRGRNSENMRVFEGLDGGKMRNVSRAERIVREIVSESIPIVSMTIQELTDEVVASMKEYLKNLIENKKEELVGLQNRLERRSDLTEETLSKCNKVQLEILVAVKMGLSSFLYGNLQLSEMVEVYLYRRCRNVTCKSLLPVDDCDCKICLGNKGFCSSCMCPICLNFDCANNTCSWIGCDVCSHWCHAVCGIQKKLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGVETLLKELDCVRRIFMGSEDRKGKELHFKTDDLLLKLQTKIVSPSDACNYIVQFFNYAENMANFPVPASGFSSKELIASQANHPKDILSLPKSSSSIPKYAYDSSYSRPHSNAPSKDLHQKDLKASILSELKNDADLQLAALLSKGGIESLESIVRIKEAEAKMFQTKADEARREAEGFQKMVRTKTAQMEEEYATKLSKLCLNETEESQRRKLDELKVVENSYIDYFKMKKRMQDEIDGLLQRMEATKQHWV* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1393 792 Coils Coil 356 383 - -
Tpr3g1393 792 MobiDBLite consensus disorder prediction 10 36 - -
Tpr3g1393 792 MobiDBLite consensus disorder prediction 1 36 - -
Tpr3g1393 792 Pfam PHD - plant homeodomain finger protein 428 552 IPR032881 -
Tpr3g1393 792 Pfam Coiled-coil region of Oberon 655 781 IPR032535 -
Tpr3g1393 792 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 343 365 IPR004082 -
Tpr3g1393 792 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 419 440 IPR004082 -
Tpr3g1393 792 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 465 485 IPR004082 -
Tpr3g1393 792 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 538 557 IPR004082 -
Tpr3g1393 792 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 688 708 IPR004082 -
Tpr3g1393 792 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 727 749 IPR004082 -
Tpr3g1393 792 CDD PHD_OBE1_like 458 517 - -
Tpr3g1393 792 Coils Coil 770 790 - -
Tpr3g1393 792 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 792 IPR004082 -
Tpr3g1393 792 Coils Coil 694 714 - -
Tpr3g1393 792 PANTHER PROTEIN OBERON 3 1 792 - -
Tpr3g1393 792 MobiDBLite consensus disorder prediction 163 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1393 Tpr-Chr3 12407790 12411758 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1393 428 557 PHD Gene Family AT5G57380 25.385 6.26e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1393 3 12407790 12411758 Tpr3g1393 3 12407790 12411758 ECH