Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0328 ATGGACGACGTAAAAGACAAGTTTAAAGGGTTCATGAAGAAAGTAACTTCTTCATCTTCATCTTCCTCTGGCAAATTCAAGGGCCAAGGTAGAGTCTTGGGTTCTTCTTCATCTTCTTCTTCTTCCACACCTGTTAATTCCATTCCTACCCCTCGCCCATCACCTTCTCCCTCTCAGAATCCTAATCCCAAACCAAACCCTAACCCTAAACCCACTTCAACGATCGCTTCAAATCCTACCAAAATCGATAAGCCTCGTAAAACTGGAGATGGGTTTGACCCATTTGATGCTTTGGTCACTTCATCTCAGAGATCTAAAAATGGGTATTCACTTAATGTATATGAATGCCCCATTTGTAAAACACCTTTTCGATCCGAAGACGAAGTTTCTGAACACGTCGAAAGTTGTTTGAGTAACTCAAATGAGCGTGTTGATAATGATGAAAAATTTGTTTCAAAGAGTGAAGAAATTGTTGAGTCTGATACTGAATTGGAGATTTGTATTGGTACTTATGTTTCAGGGAATCCATCTGTTGGGTCAGTTGATATTGTTCTGAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAAATTAGGTTGAGTAATCCAAAAATTAAAGAAGCTGTTGCTGATGTTAATGGTGGGATTGAATTGCTTAGCATTTTAGGGTTTGAACTTAGGGAGGAGAATGGAGAGACATGGGCAGTGATGGAGGTTCCTACAGAGGAGAAAATTAAATTGATTAAGAAAGCAATTGTGTTGTTGGAACCACAACTGGTACAAGATCCTCCAAAGAGGGACAATTTGGTGTCTACAGCTTCTGCTGAGAAAGTAGTCGAGGCCGAACCTGCTGAACCAAAAAAGATTGACAGACAGGTGAAGGTCTTCTTTGCTGTTGCTGAAAGTGTTGCAGCTAAAATTGAGCTACCGGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAACTAAGGAAAAAAAAGTTTGAAGAGTCTCAGCTTTTAATCCCCAAGTCACTTAGAGAAAAGCAAGCTAAAGCTGCAAAGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGCAGCTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTTCTGCTCTCTATGAGTTTGTCAGTTCCTCTATAAAAGAACCAAATTTGGAATTTGAGCTAATGCATCCTGTCGTTGTTCAACGGCGAGTTATCCCATGTTTTCCAAAAGCAGGGCAAAAAGCTAAAACTATAGAGGAAGAAGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCTCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTACTTGAAATCAGCGAACCACTTGTAAATGGTTAA 1410 0.3965 MDDVKDKFKGFMKKVTSSSSSSSGKFKGQGRVLGSSSSSSSSTPVNSIPTPRPSPSPSQNPNPKPNPNPKPTSTIASNPTKIDKPRKTGDGFDPFDALVTSSQRSKNGYSLNVYECPICKTPFRSEDEVSEHVESCLSNSNERVDNDEKFVSKSEEIVESDTELEICIGTYVSGNPSVGSVDIVLKLLRNIVKEPENVKFRKIRLSNPKIKEAVADVNGGIELLSILGFELREENGETWAVMEVPTEEKIKLIKKAIVLLEPQLVQDPPKRDNLVSTASAEKVVEAEPAEPKKIDRQVKVFFAVAESVAAKIELPDSFYKRSAEEVRREAELRKKKFEESQLLIPKSLREKQAKAAKKRYTRTIIRIQFPDAAVLQGVFAPWEPTSALYEFVSSSIKEPNLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0328 469 ProSiteProfiles UBX domain profile. 358 442 IPR001012 GO:0005515
Tpr3g0328 469 MobiDBLite consensus disorder prediction 13 47 - -
Tpr3g0328 469 SUPERFAMILY PUG domain-like 173 257 IPR036339 -
Tpr3g0328 469 MobiDBLite consensus disorder prediction 48 72 - -
Tpr3g0328 469 Pfam PUB domain 180 253 IPR018997 -
Tpr3g0328 469 CDD PUB 177 261 - -
Tpr3g0328 469 Gene3D - 175 260 - -
Tpr3g0328 469 SMART PGNneu 179 246 - -
Tpr3g0328 469 MobiDBLite consensus disorder prediction 1 96 - -
Tpr3g0328 469 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 468 - -
Tpr3g0328 469 SUPERFAMILY Ubiquitin-like 329 442 IPR029071 -
Tpr3g0328 469 Coils Coil 320 340 - -
Tpr3g0328 469 Gene3D - 352 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0328 Tpr-Chr3 3574765 3577978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0328 1 390 C2H2 Transcription Factor Family AT2G01650 57.500 7.47e-147 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g0328 PUB 4.5e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0328 3 3574765 3577978 Tpr3g0328 3 3574765 3577978 ECH