Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0319 ATGGTTATGGGTGGTAGTTGGAAGGCGGCAATGATAATGTCATCGTCGTTGAGTCACGTCCGTCCGCTAACATGCGCATCATTATCACGAATAGCTCCTCATCCACACGACCTCATCAAATGGGTAACCAGAGAAGGTGGTTTCGTTCATCGTGCGGTTAAGATTGCTCAATTTGACTCCTCCAATGGTTTAGGGTTAGTCGCTAAGGAACAAATCCCAATTGGCACTGACCTAATTGTTCTCCCTCAACATATTCCTTTGCATTTCACTTCTCATGACTCTGATTCTCTCCTCCTTCAATTGTCCTCCAATGTTCCCGATGAACTATGGGCAATGAAACTGGGTCTGAAGCTTCTACATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGCAATCTCCCACAAACTTACACTCTTCCTATCTTTTTTCCCGGGGAAGACATTAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAACAAAAGATGCAGATTTCTTCTCGATTTTGAGCAACAAGTCAAGCGTGCATTAGTCGGTCTTACACCAGATAAACATCCTTTTGGTGGCCAAGAGGTAGATGCTTCATCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCAAGTTGCATGGTAACAAGCAATCAAATGGGATAGACTTCGACATACCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTTAATCCGAATGCTAGAATTGTTCAGGAACAAGAAACTGGTAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGTAATCAAGGAAGATGATCCTTTATTGCTTTGCTATGGATGTTTAAGCAATGATCTTTTCCTTCTTGATTATGGATTTATGATACAATCAAACCCTTATGACTGTATTGAGCTTAAATATGATGGTGCTCTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTCACCAAACTTCTCCACACCTGCTCCATGGCAGCAACTTATTTTATCTCAGCTAAATCTAGCTGGAGAATCTCCAAATCTCAAGGTGAGCTTAGGTGGTCAAGAAATAATAGAAGGGCGCTTGTTGGCAGCACTGAGAGTACTCCTTGCAAGTGATATGGAAAGTGTACAAAAGCATGACCTCAACACACTCAAGTCTTTAGATGCTGAGGCTCCTCTTGGTGTTGCAAATGATATCGCTGTATTTCGTACCTTGATTGCTCTGTGTGTCATTGCACTGGAACACTTTCCCACCAAATTAGTGGATGATGAAACTTTATTGAAGCAGGGTGCTTCAGGTTCAACAGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAGTCTGTAATTATAGATGTAATGAGAAACCTCTCAAGGAAGGTAAAGCTTCTTTCATCAAAAGGGACAGTTACTGCTGAAGGCTAA 1428 0.4223 MVMGGSWKAAMIMSSSLSHVRPLTCASLSRIAPHPHDLIKWVTREGGFVHRAVKIAQFDSSNGLGLVAKEQIPIGTDLIVLPQHIPLHFTSHDSDSLLLQLSSNVPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQQVKRALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGIDFDIPMMLPLIDMCNHSFNPNARIVQEQETGSTKMRVKVVAEKVIKEDDPLLLCYGCLSNDLFLLDYGFMIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPAPWQQLILSQLNLAGESPNLKVSLGGQEIIEGRLLAALRVLLASDMESVQKHDLNTLKSLDAEAPLGVANDIAVFRTLIALCVIALEHFPTKLVDDETLLKQGASGSTELAIQFRIQKKSVIIDVMRNLSRKVKLLSSKGTVTAEG* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0319 475 PANTHER F21J9.27 13 472 - -
Tpr3g0319 475 ProSiteProfiles SET domain profile. 51 280 IPR001214 GO:0005515
Tpr3g0319 475 CDD SET_LSMT 52 293 - -
Tpr3g0319 475 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 290 467 IPR036464 -
Tpr3g0319 475 Gene3D set domain protein methyltransferase, domain 1 7 293 - -
Tpr3g0319 475 Gene3D - 330 468 IPR036464 -
Tpr3g0319 475 Pfam SET domain 63 280 IPR001214 GO:0005515
Tpr3g0319 475 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 13 472 - -
Tpr3g0319 475 SMART set_7 51 286 IPR001214 GO:0005515
Tpr3g0319 475 SUPERFAMILY SET domain 33 298 IPR046341 -
Tpr3g0319 475 Pfam Rubisco LSMT substrate-binding 330 450 IPR015353 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr3g0319 SET 3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0319 3 3439460 3444870 Tpr3g0319 3 3439460 3444870 ECH