Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0315 ATGGAGTCAAAGGGTCTTCGTTTCATGACCCACCAATCAATTTTCACCATGGTTGGATCTGGGAACCTTGATGGGTTAAAGAAACTGTTAGAGAAGCTGAAAAACGAAGATGATGATAATAGTAATAATGGGTCATCATCATCATCATCACCTATCTCTGTTTCTGATGTTATGTCTCTTCAAAACGATCATGGTGAAACACCACTTTACATAGCTGCAAACCATAATCTGAAGGAAGTTTTCACCTTTTTGCTCAAATTGTGTGATTTTGAGATTCTCAAGATTCGTTCCAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATTTGGAAATTGTGAAGGAGATTTTGAGTGCCTTTCCCGAGGTTTGTAAGTTGTGTGACTCGTCAAACACCAGCCCTTTATATTCTGCTGCAGTTCAAGACCACTTGGATGTAGTAAGTGCTATTTTGGATGTTGATGTCAGCTCTATGTTTATAGTTAGGAAAAATGGAAAAACTGCACTACACAATGCTGTTAGGTATGGCGTCCTTCGTATTGTGAAAGCACTTATCTCCCGTGATCGAGGAATAGTCTGTATCAAAGATAAAAAAGGTCAAACTGCACTTCATATGGCTGTTAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACAATATTGAATGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGAGGAAAGGCCGGTCACAGATAGTGAGCCTTTTGCTAAGCTACTCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCCGATAAACTTCCATACGGATCTTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGCAAAGTAGATGAAGCCATGGAACTTAAAAGAACTGTGAGTGATATAAAGCATGAGGTGCAGTCACAACTCATACAAAATGAAAAAACTCGCCGACGAGTTTCTGGTATAGCTAAGGAATTGAAGAAACTTCATAGAGAAGCAGTTCAAAACACCATTAACTCTGTCACAGTTGTTGCTGTCCTTTTTGCCTCGATAGCATTCTTGGCTATATTCAATTTACCGGGTCAATATATTACGGAAGGACCACAGGCAGGAAAATCTAACATAGCTGATCATGTTGGATTCCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCCCTCGCAGTTGTTGTTGTTCAAATCACTTTGGTTGCTTGGGACACAAGGGCTCAAAGACAGATTGTGTCGGTCGTTAACAAGTTAATGTGGGCTGCTTGTGCTTGCACATGCGGTGCTTTTCTTGCAATAGCTTTCGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTGGGCATACCAATTCTAGTTGGGACTCTAGCAAGTATGTGTTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCCCAGAGACGAATCAAGAGAGCGAGTGGAAGCAAATCTTTCTCGTGGTCTTACTCTGCAAATATATCAGATTTGGACGAATACAACTCGGACATTGAGAAGATCTATGCTCTGTAA 1623 0.403 MESKGLRFMTHQSIFTMVGSGNLDGLKKLLEKLKNEDDDNSNNGSSSSSSPISVSDVMSLQNDHGETPLYIAANHNLKEVFTFLLKLCDFEILKIRSKSDMNAFHVAAKRGHLEIVKEILSAFPEVCKLCDSSNTSPLYSAAVQDHLDVVSAILDVDVSSMFIVRKNGKTALHNAVRYGVLRIVKALISRDRGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSLLLSYSAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYITEGPQAGKSNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQRQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDLDEYNSDIEKIYAL* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0315 540 ProSiteProfiles Ankyrin repeat region circular profile. 167 190 - -
Tpr3g0315 540 MobiDBLite consensus disorder prediction 40 56 - -
Tpr3g0315 540 Gene3D - 7 159 IPR036770 -
Tpr3g0315 540 Coils Coil 331 351 - -
Tpr3g0315 540 Gene3D - 160 316 IPR036770 -
Tpr3g0315 540 MobiDBLite consensus disorder prediction 35 56 - -
Tpr3g0315 540 ProSiteProfiles Ankyrin repeat profile. 167 190 IPR002110 GO:0005515
Tpr3g0315 540 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 540 - -
Tpr3g0315 540 SUPERFAMILY Ankyrin repeat 14 298 IPR036770 -
Tpr3g0315 540 Pfam Domain of unknown function 351 458 IPR026961 -
Tpr3g0315 540 Coils Coil 23 43 - -
Tpr3g0315 540 Pfam Ankyrin repeats (3 copies) 165 228 IPR002110 GO:0005515
Tpr3g0315 540 Pfam Ankyrin repeats (3 copies) 69 155 IPR002110 GO:0005515
Tpr3g0315 540 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 2 540 - -
Tpr3g0315 540 Pfam Ankyrin repeat 236 267 IPR002110 GO:0005515
Tpr3g0315 540 SMART ANK_2a 64 94 IPR002110 GO:0005515
Tpr3g0315 540 SMART ANK_2a 99 128 IPR002110 GO:0005515
Tpr3g0315 540 SMART ANK_2a 201 230 IPR002110 GO:0005515
Tpr3g0315 540 SMART ANK_2a 133 163 IPR002110 GO:0005515
Tpr3g0315 540 SMART ANK_2a 235 265 IPR002110 GO:0005515
Tpr3g0315 540 SMART ANK_2a 167 196 IPR002110 GO:0005515
Tpr3g0315 540 ProSiteProfiles Ankyrin repeat region circular profile. 235 260 - -
Tpr3g0315 540 ProSiteProfiles Ankyrin repeat profile. 235 260 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0315 Tpr-Chr3 3416834 3420558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0315 1 540 Miscellaneous Gene Families AT2G01680 68.635 0.0 734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0315 3 3416834 3420558 Tpr3g0315 3 3416834 3420558 ECH