Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0294 ATGGTGAAAGCAGCGAGCAACGATAATGGTTCTGTTTCTTCTTCTTCTTCTTCTGTGGCACCTTTCTTGAACAAATGTTACGATATGGTTGAAGATCGTTCAACAGATTCAATCATCTATTGGTCTCAATTCGGTCACAGTTTCATCATCTCCAACGTTGATCAATTCTCTCTCACTCTTCTTCCCAATTATTTCAAACACAACAATTTCTCCAGTTTCGTTAGACAACTCAATATCTATGGTTTCAAGAAAATTGATGCAGATCACTGGGAGTTTGCAAATGAGAACTTCATCAGGGGTCAAAAGCATTTGCTGAAGAATATACGTAGAAGGAAACATCCACATGGTGCAGATCAGCAGAAAGCATTGCCACAGAAAGACAATCGTGGTGATGAACAATCACAAGAAGCAACGAATCACAGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAGAAACTCCCTCACGCAAGAGTTGGTCAAACATAAGCAGCGCCTAGAATCTTCTGAGAGTAAATTGCTTCTATTGAGTGATCGTCTTGAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCATTCTTGGTCATGGTTGTGCAGTGCCCTGGATTCCTGGCTCAGCTGCTTCACCCTAAGGAAAATAATTGGCGTTTGGCTGATGCTGGGAATGTGTTGTACCAAGATGACGAACCAGTTTCTTCTGATGGGATGATTATAAAGTATACGCCACCTGTTGCTGAAAAACGAAAGCCTGTAGTTCCACGATCTCCTGCCTTTGATAAGCAACCAGAACCCGAAATTTCTGCAGATGGGTTAAAAGACTTGTGCATCAGTTCTGAGTTCTTGAAATTGCTTCTAGATGAGAAACTGTCTCCATTAGATACTCATTCTCCGTTTCTTGTACCAGATTTTCCTGATGACGGTTCATGGGAAAAACTATTTTTAGGCAGTCCTGTCCTCGAAAATGCTGAAGATACTGATCATGGAAACGAGGAGCACACTGTTAGTGGCTTGGAGATGGAACACACCATATCTGCAGCTCCAAATGAAAGATCTGCTTTTGAAGCGATGATTATAGAAATGGAGAATACTCAAGCATGA 1101 0.4142 MVKAASNDNGSVSSSSSSVAPFLNKCYDMVEDRSTDSIIYWSQFGHSFIISNVDQFSLTLLPNYFKHNNFSSFVRQLNIYGFKKIDADHWEFANENFIRGQKHLLKNIRRRKHPHGADQQKALPQKDNRGDEQSQEATNHSLWKEVENLKSDRNSLTQELVKHKQRLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLAQLLHPKENNWRLADAGNVLYQDDEPVSSDGMIIKYTPPVAEKRKPVVPRSPAFDKQPEPEISADGLKDLCISSEFLKLLLDEKLSPLDTHSPFLVPDFPDDGSWEKLFLGSPVLENAEDTDHGNEEHTVSGLEMEHTISAAPNERSAFEAMIIEMENTQA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0294 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 349 IPR027725 -
Tpr3g0294 366 SUPERFAMILY "Winged helix" DNA-binding domain 17 111 IPR036390 -
Tpr3g0294 366 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g0294 366 MobiDBLite consensus disorder prediction 111 140 - -
Tpr3g0294 366 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g0294 366 Gene3D - 14 112 IPR036388 -
Tpr3g0294 366 Coils Coil 146 173 - -
Tpr3g0294 366 MobiDBLite consensus disorder prediction 117 134 - -
Tpr3g0294 366 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g0294 366 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g0294 366 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g0294 366 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr3g0294 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 12 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0294 Tpr-Chr3 3279909 3282943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0294 1 318 HSF AT1G67970 48.438 2.37e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr3g0294 HSF_DNA-bind 4.1e-30 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0294 3 3279909 3282943 Tpr3g0294 3 3279909 3282943 ECH