Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr2g2355 ATGGATGAAAGTTGGGGTGAGGGAAAGAGAAACTATGAAAATGATTATGAAGAAGAAGAAGAAGAGCAAGATTTGAGTTATGGAGATGGAAAGAAGAAAAGAGTTGTGAATGATGGTTACAACAAGAAAGGATCTAAAGCTGGTGGATCAGTGCCACCTTGTTGTCAAGTTGATAATTGTAATGTTGATCTAAGTGGTGCTAAGCAATACCATAAACGTCATAAGGTTTGTGAAAACCATTCTAAGGCTCATTCCGTACTCATTTCAGAGCTTCAACAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGACCTATCAGAATTTGATGACTTAAAAAGAAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAGTGCATCGGATTATCAGGGAGAAGTTCATTAA 417 0.3861 MDESWGEGKRNYENDYEEEEEEQDLSYGDGKKKRVVNDGYNKKGSKAGGSVPPCCQVDNCNVDLSGAKQYHKRHKVCENHSKAHSVLISELQQRFCQQCSRFHDLSEFDDLKRSCRRRLAGHNERRRKSASDYQGEVH* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr2g2355 138 ProSiteProfiles Zinc finger SBP-type profile. 52 129 IPR004333 GO:0003677
Tpr2g2355 138 Gene3D - 45 116 IPR036893 GO:0003677|GO:0005634
Tpr2g2355 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 6 131 - -
Tpr2g2355 138 SUPERFAMILY SBT domain 52 133 IPR036893 GO:0003677|GO:0005634
Tpr2g2355 138 MobiDBLite consensus disorder prediction 25 40 - -
Tpr2g2355 138 Pfam SBP domain 55 128 IPR004333 GO:0003677
Tpr2g2355 138 MobiDBLite consensus disorder prediction 1 49 - -
Tpr2g2355 138 PIRSF SBP 1 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Tpr2g2355 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 6 131 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr2g2355 Tpr-Chr2 28393325 28395813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr2g2355 39 132 SBP-box Gene Family AT2G33810 65.957 6.52e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr2g2355 SBP 2.7e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g2355 2 28393325 28395813 Tpr2g2355 2 28393325 28395813 ECH
Tpr2g2355 2 28393325 28395813 Tpr3g1947 3 17548765 17552093 ECH
Tpr7g2054 7 25692517 25693982 Tpr2g2355 2 28393325 28395813 ECH
Tpr3g1947 3 17548765 17552093 Tpr2g2355 2 28393325 28395813 PCT