Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2979 ATGATCCGAAACATTTTGAAACAATGTCATCATAAGTTTCACAACAACCCTACAACAAATTTGAATGGCAAAACGCTCTTCACTTCACTCATTCACACCCTTTCCAATCCAAACCAAAACGAGTTTGATGAATCCAAATGGAAGAATGAACAACAACTAGAAGAAGAAAATTCTGCGTTTCAGATTTCTCATCCTTGGCCTGAATGGGTAGACTTGATGGAATGTTTGCTTAAAAAGGGTCATTTTCATGCAGAGGGTAACCCATTTTTGAATCCTAATTTGGGTTCTAAAGAATCAAATCTTATTAGAACTGCTTGTCTTAATTTTGGTAGAGACAATTCTCATTTTTTAAGGTTTTTGTCTCGAAAAGATATAGGAGTTATTGTAACATTTGGATGTCCAAGCTTAGATAGGAAAGTGGTTAACTCAGGAAAGCGTCTGAGAGCACATGTTGGCATTGATGAAGGAAATGTCTGCAGCTCGTGCAATTTGAGGGGAAACTGTGAAAGGGCATTCGTCATAGCACGCGAAGATGAAGGCGGAAGAATGGTGGATGTTATGCGTATTATTTTGACATATGGACTTGACCCAATTATTGGTTCAGTTGATAACAAACCATCTCTAAATAAAATGGTAAAAGAATCTGTGAGAAGACTACTGAAAAAGATAGTAGAGTGCAGTGCTGAAGAAAAAAACCCCAATTTTTCAGACACCAATGAGGTTGCTGTCGAAGAAGTTCATCGTAATCCACAAGATAAAGGCAAAAAAGGTGTTCCAATGAAGCAAGGCGATTGGCTTTGCCCCAATTGCAATTTCCACAACTTCGCTAAAAATATCAAGTGCTTGCACTGTGACAACTTCTGTGAGGAAAAAATCAAGCAATTGAAGGAGGATAACAATCACTTACCTTTGAAGAAGGGAGACTGGATCTGCGACAAATGCAACTTCCTCAATTTTGCAAGGAATACAAGATGTTTGCTATGTAAAGAAGGGCCTTCAAATCGTCGCATTAATCCAGGGGAGTGGGCATGCGAGTCGTGCAACTACATCAATTTCAGAAGAAACATGGTTTGCCTTAAATGTGATCATAGAAGACCTAAAGTGTCAAATGCTTCAAACAATTCCCTTCAACCACAGGGAGAAGATGGCAAAACAAACATTGCTGGATATCGATTTGATGATGGTAACAAAGAATTGTCAATGGCGTCAGAAAGAAAAAGTAGGAAAAGAGATTCACATAAGTGGAGATTTGTAGAAAATGGAATTGAAAATCACAATTACTTAGAGAACTCAAATGACACTACAGAAGTTTTAGATTTTCCTATTGCTGGAGGTAAGACTGGCATGTTTGAGGCACAAAGGGGAGAAGCATATAAGAACGAGTCGCCAGATCCGCACAGAAAGCATTCGTGGCAAAGTGAAACCGATAACGAGCTTAGTTCTTCTGATAACTCGAGTACCGATGATGAAGAGATGGCTGAATGGTTTGGAAAGGGTAAGAATGCAAGGTAG 1512 0.3889 MIRNILKQCHHKFHNNPTTNLNGKTLFTSLIHTLSNPNQNEFDESKWKNEQQLEEENSAFQISHPWPEWVDLMECLLKKGHFHAEGNPFLNPNLGSKESNLIRTACLNFGRDNSHFLRFLSRKDIGVIVTFGCPSLDRKVVNSGKRLRAHVGIDEGNVCSSCNLRGNCERAFVIAREDEGGRMVDVMRIILTYGLDPIIGSVDNKPSLNKMVKESVRRLLKKIVECSAEEKNPNFSDTNEVAVEEVHRNPQDKGKKGVPMKQGDWLCPNCNFHNFAKNIKCLHCDNFCEEKIKQLKEDNNHLPLKKGDWICDKCNFLNFARNTRCLLCKEGPSNRRINPGEWACESCNYINFRRNMVCLKCDHRRPKVSNASNNSLQPQGEDGKTNIAGYRFDDGNKELSMASERKSRKRDSHKWRFVENGIENHNYLENSNDTTEVLDFPIAGGKTGMFEAQRGEAYKNESPDPHRKHSWQSETDNELSSSDNSSTDDEEMAEWFGKGKNAR* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2979 503 Pfam Zn-finger in Ran binding protein and others 340 362 IPR001876 -
Tpr1g2979 503 Pfam Zn-finger in Ran binding protein and others 305 329 IPR001876 -
Tpr1g2979 503 Pfam Zn-finger in Ran binding protein and others 261 286 IPR001876 -
Tpr1g2979 503 MobiDBLite consensus disorder prediction 369 412 - -
Tpr1g2979 503 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 248 285 - -
Tpr1g2979 503 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 282 501 - -
Tpr1g2979 503 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 36 240 - -
Tpr1g2979 503 PANTHER ZINC FINGER PROTEIN 282 501 - -
Tpr1g2979 503 PANTHER ZINC FINGER PROTEIN 248 285 - -
Tpr1g2979 503 PANTHER ZINC FINGER PROTEIN 36 240 - -
Tpr1g2979 503 SUPERFAMILY Ran binding protein zinc finger-like 331 367 IPR036443 -
Tpr1g2979 503 SUPERFAMILY Ran binding protein zinc finger-like 253 287 IPR036443 -
Tpr1g2979 503 Gene3D - 296 332 - -
Tpr1g2979 503 Gene3D - 333 368 - -
Tpr1g2979 503 Gene3D - 252 290 - -
Tpr1g2979 503 ProSiteProfiles Zinc finger RanBP2 type profile. 338 367 IPR001876 -
Tpr1g2979 503 ProSitePatterns Zinc finger RanBP2-type signature. 342 361 IPR001876 -
Tpr1g2979 503 MobiDBLite consensus disorder prediction 455 503 - -
Tpr1g2979 503 SMART zf_4 307 331 IPR001876 -
Tpr1g2979 503 SMART zf_4 263 287 IPR001876 -
Tpr1g2979 503 SMART zf_4 340 364 IPR001876 -
Tpr1g2979 503 MobiDBLite consensus disorder prediction 397 412 - -
Tpr1g2979 503 ProSitePatterns Zinc finger RanBP2-type signature. 309 328 IPR001876 -
Tpr1g2979 503 ProSiteProfiles Zinc finger RanBP2 type profile. 261 290 IPR001876 -
Tpr1g2979 503 MobiDBLite consensus disorder prediction 457 474 - -
Tpr1g2979 503 ProSitePatterns Zinc finger RanBP2-type signature. 265 284 IPR001876 -
Tpr1g2979 503 ProSiteProfiles Zinc finger RanBP2 type profile. 305 334 IPR001876 -
Tpr1g2979 503 SUPERFAMILY Ran binding protein zinc finger-like 298 330 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2979 Tpr-Chr1 34219477 34223345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2979 52 398 EF-hand Containing Proteins AT1G55040 37.433 1.06e-62 217
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2979 1 34219477 34223345 Tpr1g2979 1 34219477 34223345 ECH