Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2978 ATGGTTTGTTTGGTATCTCGTTCTGGAAGGCAGATGCAAAGATACAATAGTACCGGTGGCCGTCAAGTTGTCGGGTGTATCCCTTACAGATATAAAACAGATATTGATGGCAATATGAGTAATGAATTGGAGGTACTTGTTGTTAGTTCACAAAAGGGTCAAGCATTGATGTTTCCCAAGGGTGGATGGGAACTTGATGAATCTTTAGAAGAAGCAGCTTGTAGAGAATCCCTTGAAGAAGCAGGAGTTATAGGAATTGTTGAGCATGAATTGGGTGAATGGAGTTTCATTAGCAAAAGATATGGTACATACTATGAAGGTCACATGTTTCCCTTACTTGTCAAGGAACAACTTGATATTTGGGCTGAGAAAAATCTACGTACAAGAATATGGATGAATGTTGTTGAAGCTAGAGAAGTTTGCCAACATTGGTGGATGAAAGAAGCATTAGATATACTTATTGATAGGCTAACTCCACAGCAAAAAAATAACATTTAG 498 0.3815 MVCLVSRSGRQMQRYNSTGGRQVVGCIPYRYKTDIDGNMSNELEVLVVSSQKGQALMFPKGGWELDESLEEAACRESLEEAGVIGIVEHELGEWSFISKRYGTYYEGHMFPLLVKEQLDIWAEKNLRTRIWMNVVEAREVCQHWWMKEALDILIDRLTPQQKNNI* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2978 165 ProSitePatterns Nudix box signature. 61 82 IPR020084 GO:0016787
Tpr1g2978 165 CDD Nudix_Hydrolase_9 22 147 - -
Tpr1g2978 165 SUPERFAMILY Nudix 18 157 IPR015797 -
Tpr1g2978 165 Pfam NUDIX domain 44 138 IPR000086 -
Tpr1g2978 165 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 156 - -
Tpr1g2978 165 PANTHER NUDIX HYDROLASE-LIKE PROTEIN 1 165 - -
Tpr1g2978 165 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 165 - -
Tpr1g2978 165 ProSiteProfiles Nudix hydrolase domain profile. 19 154 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2978 Tpr-Chr1 34188967 34190926 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2978 1 34188967 34190926 Tpr1g2978 1 34188967 34190926 ECH