Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2975 ATGGATTCAAACTCACTATGCTTCATAACCCACCAAGAAATTTTCAATGTGGTTCGATCTGGTGATCTTGAAGGACTCAAAGAGTTACTGAAACATGTTAACAAAGGTGAATCCTCAAATGGGTCATCATCATCATCATCAACATCAATTTCTGAATTTATGTCCATGCAGAATGATGCTGGAGAGACTTTATTGTATATAGCTGCAGAAAATGGTGTTATGGATTTGTTTTGTTTCTTGTTAAGGTTTTGTGATTTGGAGATACTTAAGATCAGGTCTAAATCTGATATGAATGCATTTCATGTTGCAGCTAAGCGTGGTCATTTGGAAATTGTGAGGGAGATTTTGAGTATTTGGCCCGAGGCTTGTAAGTTATGCGACTCCTCGAGCACTAGTCCACTTTATTTTGCTGCTGTACAAGACCATTTGGATGTAGTGAATGCTATTTTGGATGTTGATGTCAGTTCAATGATGATAGTAAGAAAAAACGGCAAAACTGCGTTGCACAATGCTGCTAGATACGGCATTCTTCGCATTGTAAAAGCACTTATTGAAAGGGATTCAGCAATTGTTTGCATCAAAGATAGAAAAGGTCAAACAGCACTGCATATGGCTGTAAAAGGCCAAAGTACTTCAGTAGTTGAGGAGATTTTACAAGCCGACCCGATGGTATTGAATGAACGAGATAAGAAGGGTAACACAGCTCTTCACATGGCCACTCGGAAAGCTCGCTCGGAGATAGTGAGCTTTCTGTTGAGCTATGCATCGATGAATGTCAATGCCATCAATAATCAACAAGAAACAGCCTTGGACTTGGCAGATAAACTTCCGTACAGAGATTCATCTTTGGAAATCAAGGAAGCCCTTTCGGAATGCGGTGCCAAGAATGCCAGACATATTGGAAAAGCGAATGAAGCCATGGAACTTAAAAGAGCTGTGAGTGATATAAAGCACGAAGTGCAGTCACAACTAATACAGAACGAAAAAACTCGCAAACGGGTTTCTGGTATAGCAAAGGAATTGAGAAAGATTCATCGGGAGGCAATTCAAAACACGATAAATTCTGTCACGGTAGTTGCTGTCCTTTTTGCCTCAATAGCATTCATGGCTTTGTTCAGTTTGCCAGGTCAATACAGAAAGCTACAACCGGAGGCAGGGAAAGCGAATATAGCTCACGAGGTTGCATTCAGTGTTTTCTGTCTTTTGAATGCAACGTCTCTTTTCATTTCTCTTGCGGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACATGAGGGCACAAAGGCAGATTGTATCGGTGATTAACAAGCTAATGTGGACGGCTTGTACATGTACTTGTGGAGCGTTTCTCGCGATAGCTTTTGTGGTCGTTGGAAAGGAAAGATGGATGGCTACTACTGTAACCATTTTGGGAACACCGATTCTAGTTGGGACTCTAGCATACTTGTGCTACTTTGTGGTTCGACGACATTTTGGATTTCGAAGTGATTCCCAGAGAGTATTAGCTAAGAGGCCAAGTGGAAGCAAATCATTCTCGTGGTCTTACTCTGCACATATATCAGACGTGGAGGAATATAATTCTGATGTTGAGAAGATGTATGCTCTGTGA 1611 0.4109 MDSNSLCFITHQEIFNVVRSGDLEGLKELLKHVNKGESSNGSSSSSSTSISEFMSMQNDAGETLLYIAAENGVMDLFCFLLRFCDLEILKIRSKSDMNAFHVAAKRGHLEIVREILSIWPEACKLCDSSSTSPLYFAAVQDHLDVVNAILDVDVSSMMIVRKNGKTALHNAARYGILRIVKALIERDSAIVCIKDRKGQTALHMAVKGQSTSVVEEILQADPMVLNERDKKGNTALHMATRKARSEIVSFLLSYASMNVNAINNQQETALDLADKLPYRDSSLEIKEALSECGAKNARHIGKANEAMELKRAVSDIKHEVQSQLIQNEKTRKRVSGIAKELRKIHREAIQNTINSVTVVAVLFASIAFMALFSLPGQYRKLQPEAGKANIAHEVAFSVFCLLNATSLFISLAVVVVQITLVAWDMRAQRQIVSVINKLMWTACTCTCGAFLAIAFVVVGKERWMATTVTILGTPILVGTLAYLCYFVVRRHFGFRSDSQRVLAKRPSGSKSFSWSYSAHISDVEEYNSDVEKMYAL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2975 536 SMART ANK_2a 95 124 IPR002110 GO:0005515
Tpr1g2975 536 SMART ANK_2a 231 261 IPR002110 GO:0005515
Tpr1g2975 536 SMART ANK_2a 197 227 IPR002110 GO:0005515
Tpr1g2975 536 SMART ANK_2a 60 88 IPR002110 GO:0005515
Tpr1g2975 536 SMART ANK_2a 129 159 IPR002110 GO:0005515
Tpr1g2975 536 SMART ANK_2a 163 192 IPR002110 GO:0005515
Tpr1g2975 536 ProSiteProfiles Ankyrin repeat region circular profile. 231 253 - -
Tpr1g2975 536 Pfam Ankyrin repeat 163 186 IPR002110 GO:0005515
Tpr1g2975 536 Gene3D - 9 317 IPR036770 -
Tpr1g2975 536 ProSiteProfiles Ankyrin repeat region circular profile. 163 190 - -
Tpr1g2975 536 ProSiteProfiles Ankyrin repeat profile. 231 253 IPR002110 GO:0005515
Tpr1g2975 536 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3 536 - -
Tpr1g2975 536 Pfam Domain of unknown function 347 456 IPR026961 -
Tpr1g2975 536 ProSiteProfiles Ankyrin repeat profile. 163 190 IPR002110 GO:0005515
Tpr1g2975 536 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Tpr1g2975 536 Pfam Ankyrin repeats (3 copies) 197 260 IPR002110 GO:0005515
Tpr1g2975 536 Pfam Ankyrin repeats (3 copies) 65 151 IPR002110 GO:0005515
Tpr1g2975 536 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 3 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2975 Tpr-Chr1 34145167 34148564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2975 1 536 Miscellaneous Gene Families AT2G01680 67.225 0.0 711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2975 1 34145167 34148564 Tpr1g2975 1 34145167 34148564 ECH