Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2971 ATGTCAATTCTCAGCTCTCTCCGATCATCAAAACTCATCACCTGGAAACCCACCGGAAAGCTTCAACAAACCCTAACAAGATCTGTGGAACGGAAAGGAATCTCTTTGCATTCTGGAAAAGTTTCGAAGGTGAAATTGTGTCCTGGATTTTCAGGTCAAGGAAGGTATTTCGATTTTCGGTCGAATTTGGTTCCTGCTTCGGTTGAATTTGCTCAGGTGTCGCCTCTTTGTACTACTTTGTGTAAAGATGGGGTGAAGATTCGGACTGTGGAGCATTTGCTTTCGGCGTTGGAAGCTGTTGGTGTTGATAATTGTAGGATTGAGATTGAGAATTTGGATGATCAATGTGATGAAGCTGAGATTCCTATACTTGATGGATCAGCAAGGGAATGGGTGGCAGCCTTGGAAGAAGTGGGTTTAGAGATAGCAACTGATGTTGATGGAAAAAGCTATGAGAAAATAGCTCCACATGTTAATCAACCGGTGCATATTTGGAGGAATGATTCTTTTGTTGCCGCATTTCCTTCGGAAGTGGTTCGAGTAACTTATGGTATAAACTTTCCACAGGCACCTGCTATTGGCAACCAGTGGTTTTCTACAACCCCCTTGGATGATTTGGTTTATTCCAAGCAAATAGCAATGTCAAGAACCTTCTGTATCTATGAGGAGGTTGAGCAAATGCGCAATGCTGGACTTATCAAAGGGGGTTCACTAGAAAATGCCATTGTGTGCAGTGCCAGTAAAGGTTGGTTGAATCCACCACTTCATTTCAGTGATGAACCATGTCGTCATAAGATTCTAGATCTTATTGGTGATCTCTCGCTGTTTGCTCAGTTTGGTAATCAAGGACTCCCAGTGGCATGCATCATAGCTTACAAGGGTGGTCATGCATTGCATGTTGATTTGGCTCGCCAACTGATGGGAATAACATGA 933 0.4309 MSILSSLRSSKLITWKPTGKLQQTLTRSVERKGISLHSGKVSKVKLCPGFSGQGRYFDFRSNLVPASVEFAQVSPLCTTLCKDGVKIRTVEHLLSALEAVGVDNCRIEIENLDDQCDEAEIPILDGSAREWVAALEEVGLEIATDVDGKSYEKIAPHVNQPVHIWRNDSFVAAFPSEVVRVTYGINFPQAPAIGNQWFSTTPLDDLVYSKQIAMSRTFCIYEEVEQMRNAGLIKGGSLENAIVCSASKGWLNPPLHFSDEPCRHKILDLIGDLSLFAQFGNQGLPVACIIAYKGGHALHVDLARQLMGIT* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2971 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Tpr1g2971 310 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 20 310 IPR004463 GO:0008759|GO:0009245
Tpr1g2971 310 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Tpr1g2971 310 Gene3D lpxc deacetylase, domain 2 157 309 IPR011334 GO:0008759|GO:0009245
Tpr1g2971 310 Gene3D lpxc deacetylase, domain 1 20 146 IPR015870 GO:0008759|GO:0009245
Tpr1g2971 310 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 4 308 IPR004463 GO:0008759|GO:0009245
Tpr1g2971 310 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Tpr1g2971 310 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2971 5 306 Carbohydrate Esterase AT1G25054 65.232 1.87e-144 408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2971 1 34109766 34114764 Tpr1g2971 1 34109766 34114764 ECH