Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2969 ATGTCTTCTTCACGAACAACAATCGAAACTGAAACACAAGACTCACAAGCGCCGCTCCTCCGTTCACGTCATGACAACCGCGGTACTTCCCTCGCGCTCTTACTCGGACGCGCCGCCGGGCGTAGAGGACCGTCGGTGCTCGTACGAGAGACAGCGGCGCGTGAGCTTGAAGAGCGTCGTGCTGACTGGGGATACTCGAAGCCGGTTGTCGCGCTTGACATGTCATGGAATATGGCTTTCGTTGTTGTATCGGCGGTGATGCTATTTTGCACCGTTGATGAGCATCCAAACACGCCGATCCGTGTTTGGATCATCGGTTACGCGCTTCAGTGTTTAGTTCACGTTGTTCTGGTGTGGCTTGAGTATCACCGTCGTAGTCGGAGGGATTCACGGCGGCGGCAGAGAGGTAGTGATCCTGAATTGAGTTCTGATGGATACGACAGTGATGACAGCGACGTGAACTCGTCTCAGTCCAGATTTACCAAGCGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGCTAGGCTTTTACTGGATTGTCTCTGCAGATGATATGCTTCTGCAAGATGCTCCACGCTTGTACTGGTTGGCTGTTATCTTTCTGGCATTTGATGTATTCTTTGCCATCTTCTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCCGTTGCAGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGTATGCTTCCAAAATATAGATTTCGATTATTAAACAATGAGGAGAAGGATAGTGGTGGAGCTGGATCAATGGTTCCTATAGAAACCACCAGTGCATACTTGGCAAATGAGCGGGTGCTTTTACCTGAGGACGCAGAATGCTGTATATGTCTCTGTACATACGAGGATGGAGTAGAGCTTCACACTCTTCCCTGCAATCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGTAAGTACAATATTCTCAAGGGAAATGAACAGGTATGA 1050 0.4762 MSSSRTTIETETQDSQAPLLRSRHDNRGTSLALLLGRAAGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLFCTVDEHPNTPIRVWIIGYALQCLVHVVLVWLEYHRRSRRDSRRRQRGSDPELSSDGYDSDDSDVNSSQSRFTKRCESINTGVSFLWWMLGFYWIVSADDMLLQDAPRLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPKYRFRLLNNEEKDSGGAGSMVPIETTSAYLANERVLLPEDAECCICLCTYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2969 349 SUPERFAMILY RING/U-box 286 343 - -
Tpr1g2969 349 SMART ring_2 298 338 IPR001841 -
Tpr1g2969 349 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Tpr1g2969 349 CDD RING-H2_PA-TM-RING 297 339 - -
Tpr1g2969 349 MobiDBLite consensus disorder prediction 1 21 - -
Tpr1g2969 349 MobiDBLite consensus disorder prediction 131 153 - -
Tpr1g2969 349 PANTHER TARGET OF ERK KINASE MPK-1 12 349 - -
Tpr1g2969 349 Pfam Ring finger domain 297 339 IPR001841 -
Tpr1g2969 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 344 IPR013083 -
Tpr1g2969 349 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 12 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2969 Tpr-Chr1 34092240 34096966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2969 14 348 C3H Transcription Factor Family AT1G68070 68.639 2.27e-172 481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2969 1 34092240 34096966 Tpr1g2969 1 34092240 34096966 ECH