Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2963 ATGGAGCAGTCAAGTATGAACTCCGGCGAGTTTCCGGCTGGTTTAAGAGTTCTGGTTGTTGATGATGACGTCACTACCTTGAAGATAATTGAGCGAATGTCTGTTCGCTGCCATTATCGCGTCACTACATGCTCTGAGGCTACTGCTGCTTTAAAAATTCTGCGGGAAAGGAAAGGCTGTTTTGATGTTGTGTTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGGACAAGTACTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTTATTAAGCCCGTACGTTTGGAAGAACTTAGGAATATATGGCAGCATGTTGCTAGGAAATTTTTGAATGAAAGTAAAGAACATGATAATTCTAGCAGCAGAGAAGATAATGATCGCAATAACATTTCTTCTGCTGCTGGTGCAACAAAAGGAATAGTTAAAGAACAAAAAAAGAGAAGCAATTTAAAAGATGAAGAAGATGTTGAATTGGAGAATGATGATCCCTCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTGGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGACTTGACAAGGCTGTACCAAAGAAAATACTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCGAGTCATTTGCAGAAATTTAGACTTTATTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGAGATGCTAAACACAGTTCCCGGGACTATAGAATCCAAACTAGCTGCTGCTGAAAGATACATACAAACTGTGGCTGCTTCCGGCTATGTTTCCCCTGAAACACTTGCAGCCCTTCATGCTGAACTCTTAGGTCACCCGGTAACTAACATAGTGCCTACAGTGGATAGGACTACGCTAATGCAAGCATTTGAACAGGAGCCAAAACACTCTGGTGCTGATGACCATGATGTAGCATCTGGTCAGCCTCTTGCAAAATGTCCTTCCAACATTGTCAATAATTTCCCTCAGTCCATCTTAAAAGTAGATAATTCATCGTTAGGATATGGAGCATGGCCGCCATCTGATACACTTGGTTCAGTCTCTAGGGGAAGTTTAGGCGTTCCGAATAATAACATGGTGATAGATATATTGCAGCACCATCAAAAGCATCAACATCAACAAAAACAACAGAAGTCACCGATACATGATCAAAATCAATCAATCAATGTTCAACCATCTTGCTTAGTGGTTCCTGCTCAATCTTCTGACACTTTCCAGGAAGTAAAATCTGTTGCTTCTGTCAACAAGGATTGCAGTTTCAGCAGAAATGCCATTATTGATTATAGTCAACAATCACAAAAATCAAATATTTCATCCAGTACATCTCAATATCTTGGCAGGGACACCAAATCTACCTCCATTTCTCCTCTAATGTCCTCTTTTTCAGTTGGCTCCAGCAATAGCAATATTCAGCAGATTCAAAACTCAACTTCAACATTTGGTGCTGCGAGACCATTGCCTAGCCTTCTGCCCATGACATTTAGACAAGTTCCATATGATATTAAATCCAGTGATTCACTTGATCAAGTATGTCTTAGGAATCCTAGATTTGTTGGGAAAGGTAACCACATATCAAGTTTTGAAAATGAAATTGAATCATCTGCAAGTGATTTTAGTCATATGAAAGTATTCGTAGCTTGCAATGGTAACACAGTGAAGGAGGAACCAAAGGAGGAACCAAATTTTATCAGATATTCAAATGTGAACCATCCAGTTCTATATAATTATCCATCTCATGATCATTCAAGTGCATCCACTTAA 1857 0.3963 MEQSSMNSGEFPAGLRVLVVDDDVTTLKIIERMSVRCHYRVTTCSEATAALKILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKFLNESKEHDNSSSREDNDRNNISSAAGATKGIVKEQKKRSNLKDEEDVELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKKILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNEMLNTVPGTIESKLAAAERYIQTVAASGYVSPETLAALHAELLGHPVTNIVPTVDRTTLMQAFEQEPKHSGADDHDVASGQPLAKCPSNIVNNFPQSILKVDNSSLGYGAWPPSDTLGSVSRGSLGVPNNNMVIDILQHHQKHQHQQKQQKSPIHDQNQSINVQPSCLVVPAQSSDTFQEVKSVASVNKDCSFSRNAIIDYSQQSQKSNISSSTSQYLGRDTKSTSISPLMSSFSVGSSNSNIQQIQNSTSTFGAARPLPSLLPMTFRQVPYDIKSSDSLDQVCLRNPRFVGKGNHISSFENEIESSASDFSHMKVFVACNGNTVKEEPKEEPNFIRYSNVNHPVLYNYPSHDHSSAST* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2963 618 Gene3D - 15 152 - -
Tpr1g2963 618 Gene3D - 189 252 - -
Tpr1g2963 618 MobiDBLite consensus disorder prediction 165 179 - -
Tpr1g2963 618 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 249 IPR017930 -
Tpr1g2963 618 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 442 IPR045279 GO:0009736
Tpr1g2963 618 Pfam Myb-like DNA-binding domain 195 243 IPR001005 -
Tpr1g2963 618 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Tpr1g2963 618 SMART REC_2 15 127 IPR001789 GO:0000160
Tpr1g2963 618 MobiDBLite consensus disorder prediction 138 190 - -
Tpr1g2963 618 CDD REC_typeB_ARR-like 17 131 - -
Tpr1g2963 618 SUPERFAMILY CheY-like 14 137 IPR011006 -
Tpr1g2963 618 Pfam Response regulator receiver domain 17 126 IPR001789 GO:0000160
Tpr1g2963 618 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 8 442 - -
Tpr1g2963 618 ProSiteProfiles Response regulatory domain profile. 16 131 IPR001789 GO:0000160
Tpr1g2963 618 SUPERFAMILY Homeodomain-like 190 250 IPR009057 -
Tpr1g2963 618 PIRSF RR_ARR_type-B 1 615 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2963 Tpr-Chr1 34025305 34031262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2963 10 264 Response Regulator Gene Family AT2G25180 56.863 1.36e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr1g2963 Response_reg 1.4e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2963 1 34025305 34031262 Tpr1g2963 1 34025305 34031262 ECH