Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2950 ATGTCTCTCCCAATCCTCAATTTCTTCATCTTCTTGTTTTACCTCTCAAATCTTCAACCTTCAATTTCCCAACTAACATTCAATTCCTTCAATATCTCACACTCACCATGGCTTCCATCACAAAACAAAACATTAATTTCTCCAAATTCCAACTTCAAAGCTGGTTTTTTCCCAATACCAAATTCACCAAATTTCTTCACTTTCTCAATTTGGTTCTCAAAAATCCCTCAATCTTCAAACCCTCTTATTTGGAGCATCTCAACAAAACTCAACTCATCTTCATCCCTCATCATAACCCAAAAAGGTGATCTTTTACTCAACAATGTTTCATTTGTTAACAATTCCAATTCAACCCAACTTGTTCTTCATGATAATGGATACCTTGTTTTTGGAAATTGGTTTAGTTTTTCAAATCCAACTAATACCATTTTACCAACCCAAAACATTAGTGACATTGAAATTGTTTCAAGTAATCAAAAATTCAAGTTTGTTGATTCTCAAAATTTGATCTTGAATGATAATTCATCTGTTAATTCATCTGCTAAATACTATAGTACACCAAGCCCTTTGTTGTTTATGGATGATGTTGGAAAAATGACTATGCTAGCTAACTCTTTTCTTACTTCTGATTATGGTGATTCTAGGTTTAGAAAACTTGTTCTTGATGATGATGGAAATTTAAGAATTTATAGTTTTTATCCTGAACAAAAAAATACATGGGTTGTTGTTTGGTTAGGAATTTGGGAAATGTGTAAAGTCAAAGGAAAATGTGGACCTAATTCAATTTGTATGCCAAGAGAAGATTTTTATAATTCAACTTTTTGTATTTGTCCTTCTGGATTTGAGTCTGTTGAAGGTGGAAGTGAAAAGGGTTGTAAGCGAAAAATTCCACTTTCGAGTAATACTCATTTTCTTAGGCTTGATTATGTAAACTATACAAGTAGTGGTTCTATGAATCAAATCCTTGCTTTTAACTATACAATTTGTGAATCAAGTTGTAGAAGAAATTCGAGCTGTCTTGGATTTGGATTCAAGTACGATGGATCGGGTTATTGTGTGTTGTTACATGGAAAACAGCTTCAATATGGTTATTGGTCGCCGGGGACTGAACTTGCTTTGTTTTTGAAACTTGATCAAAAGGAATCAGAAGCTTCTAATTTCATCGGTATGACAGAAGTTATGCAAACAACTTGTCCGGTTAGGATAAGTTTGCCTTTACCGCCGAAGGATTCGAACACTACCACTAGAAATATTGTGATTATTTGCACGCTTTTTGCGGCTGAACTTATTGCTGGTGTGGCGTTCTTTTGGTCTTTCCTTAAGAGGTATATCAAATATAGGGACATGGCTACAACGTTGGGGCTTGAACTTTTACCTGCAGGTGGTCCGAAAAGGTTTACCTACTCGGAGATCAAAGCTGCTACTAATGATTTCTCGAATCTTATTGGGAAAGGTGGATTTGGAGATGTTTACAAAGGTGAGTTGCCAGATCATCGTGTTGTTGCGGTGAAGTGCTTAAAGAATGTTACTGGTGGTGATGCAGAATTTTGGGCGGAAGTTACCATCATTGCGAGGATGCATCATCTTAACTTGGTTCGATTATGGGGCTTCTGCGCCGAGAAAGGTCAAAGGATACTTGTTTATGAATACATCCCGGGTGGATCGTTGGATAAGTATCTCTTCAGAGTCAAATCTAAAAAGGGTAGCGGTGAATCTGAATCTGATATAAGTCATGATACTAGTTCCAATCCAAGTATCTTAGAGAAACCTGTTTTGGATTGGAACATGAGGTATAGAATAGCTCTTGGTATGGCAAGGGCTATTGCATATCTACATGAGGAGTGTTTAGAATGGGTTTTGCATTGTGATATAAAGCCAGAAAACATTCTCTTAGGTGATGATTGTTGCCCTAAGATATCCGATTTTGGATTGGCGAAACTAAGGAAAAAAGAAGACATGGTGACTATGTCAAGAAGGAGAGGAACTCCTGGTTATATGGCACCGGAATGGATAACAGCAGATCCAATAACTTCAAAAGCTGATGTTTATAGTTTTGGTATGGTGTTGTTAGAGCTTGTGAGTGGAGTGAGGAACTTCGAGATTCAAGGCTCTGTGGCGAGGAGCGATGAATGGTATTTCCCTGGTTGGGCTTTTGATAAGATGTTTAAGGAAATGAGAGTTGAAGAAATTCTTGATAGTCAAATTTGTCATGCTTATGATAGTAAAGCACATTTTCAATTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAAGATAGGCCTGAATCAAGGCCAACAATGGGAAAGGTGGCTAAGATGATAGAAGGGACTGTTGAGATCATGGACCCTAAGAAACCAACTGTTTTCTTCCTTGGTGAAGAGTAG 2391 0.371 MSLPILNFFIFLFYLSNLQPSISQLTFNSFNISHSPWLPSQNKTLISPNSNFKAGFFPIPNSPNFFTFSIWFSKIPQSSNPLIWSISTKLNSSSSLIITQKGDLLLNNVSFVNNSNSTQLVLHDNGYLVFGNWFSFSNPTNTILPTQNISDIEIVSSNQKFKFVDSQNLILNDNSSVNSSAKYYSTPSPLLFMDDVGKMTMLANSFLTSDYGDSRFRKLVLDDDGNLRIYSFYPEQKNTWVVVWLGIWEMCKVKGKCGPNSICMPREDFYNSTFCICPSGFESVEGGSEKGCKRKIPLSSNTHFLRLDYVNYTSSGSMNQILAFNYTICESSCRRNSSCLGFGFKYDGSGYCVLLHGKQLQYGYWSPGTELALFLKLDQKESEASNFIGMTEVMQTTCPVRISLPLPPKDSNTTTRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKCLKNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRVKSKKGSGESESDISHDTSSNPSILEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMRVEEILDSQICHAYDSKAHFQLVNRMVKTAMWCLQDRPESRPTMGKVAKMIEGTVEIMDPKKPTVFFLGEE* 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2950 796 SUPERFAMILY Protein kinase-like (PK-like) 459 776 IPR011009 -
Tpr1g2950 796 SMART serkin_6 476 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2950 796 PANTHER OS07G0415500 PROTEIN 8 796 - -
Tpr1g2950 796 Pfam Protein kinase domain 480 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2950 796 PANTHER OS10G0101000 PROTEIN 8 796 - -
Tpr1g2950 796 ProSitePatterns Protein kinases ATP-binding region signature. 482 504 IPR017441 GO:0005524
Tpr1g2950 796 Gene3D Transferase(Phosphotransferase) domain 1 553 787 - -
Tpr1g2950 796 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 150 IPR036426 -
Tpr1g2950 796 Pfam S-locus glycoprotein domain 212 283 IPR000858 GO:0048544
Tpr1g2950 796 ProSiteProfiles Protein kinase domain profile. 476 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2950 796 PIRSF SRK 1 796 IPR024171 GO:0004674
Tpr1g2950 796 Gene3D Phosphorylase Kinase; domain 1 450 550 - -
Tpr1g2950 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Tpr1g2950 796 CDD STKc_IRAK 482 778 - -
Tpr1g2950 796 ProSiteProfiles PAN/Apple domain profile. 292 378 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2950 Tpr-Chr1 33873114 33875899 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2950 464 788 Receptor kinase-like Gene Family AT4G18250 39.759 3.94e-76 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Tpr1g2950 Pkinase 9.8e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2950 1 33873114 33875899 Tpr1g2950 1 33873114 33875899 ECH