Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2946 ATGGGTTTCGGAGTTTCCTACGTTCTTCAACTTATGGTGATGTTTTCTCTGATGTTTGTTTGTGCATTGTCTCAAGATGATGTTGTGATGAAAAAGCTGAAAACTACAATATCAAAAAATAATCTTGATTGGTCAGACAAAGATTTTTGCAATTGGAAAGGAGTTCGGTGTAGTGGAACAAAGAGGGTCACTACAATTGAACTTAGAAGTTCAACTGTTGAAGGTTCTTTACCACAAGAATTGGTGCAACTCACTGAGTTAAATTATTTTCGTTGCAGTGGAAATAGCTTATCTGGAAATTTCCCTTACATGCCAAATTCCCTTCAGAAGTTGTATATTGACAACAACAAATTCACTTCCATGCCAAATGATTTCTTCACCAACATGAGTAATTTGATAGAGGTAGCAATTGATTATAACCCTTTTTCTCAATGGCAAATTCCTTTTAGTCTTAAGAATTGTTTAGCTCTTCAGACATTTTCTGCTGTAAATGTTAGTTTTGTTGGTGTAATTCCTGAATTCTTTGGTGAAGAAACTTTTCCAAGTTTAACTACTTTGAAGTTGTCTTTTAATTCTCTTGAAGGTAATTTGCCTAATAGTTTATCTGGTAGTTCTATACAGACCCTTTGGGTGAATGGTCAAAAGAGTAATAATAAACTCAATGGTACACTTTCTATTTTACAAAATATGACTTCATTGCAACAAATTTGGGTTCATGGCAATTCGTTTACCGGTCCTATACCTGATTTTTCAAATCTTGATCAATTGTATGATGTTAGTTTGAGGGATAATCAATTAACCGGTGTTGTTCCATCGTCTTTATCTTCCCTTCAGAGTTTGAAAATTGTGAATTTGACAAACAATGATCTTCAAGGTTCACCTCCTAAGTTTCAAGACAGTGTTCAGGTTGATATAGATATAGATAAAGGGAGGCATAGCTTTTGCACTGAGGTTGTTGGCCAACCATGTAGTCAACTTGTTAATGTTTTACTTTCTGTTGTTGAACCTTTTGGTTATCCTCTTAAAATTGCTCAAAGTTGGAAAGGTAATGACCCTTGTCATGGTCCTAATTGGTTAGGGATTGTTTGTTCTTCAGGTGGTAACATTATCATTATCGACTTTGAAAACAAGGGTTTTTCTGGCAGTATATCTCCTAGTTTTGCAAGTCTTAGTTCTGTGACGAAGTTACGTCTTGCTAACAATAATCTCACCGGTACTATACCTAAGCAACTTGCTAGTATGCCGGTTTTGCAATTGCTAGATGTTTCCAATAATTCGTTGTATGGTCAGATACCTTCGTTTCGTGCAGGTGTGGTTGTTAACACCAATGGGAATCCTGATATCGGAAAGGATAAACCTCACGGGTCGCCCGACTCTAGTTCTGGAGGGGAAGATAAGAAGAAACTTGGTGTTGGAGCTATTGTTGGTATTGTAATAGGCATTGTTGGCTTACTTGGTGTGGGGGCTTTTGTATTTGTTATTTATGGTAAAAGACATAATAAGCGCGACAACAAAGTTCACACTCCAAATGCAATAGTGGTACATCCTCGTAATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCATCTGAAAGTGTCGGTGCCAGCGTTGCAGGAGGAACCGGTGGATTTAGTCTATCGAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCAATTCAAGTTTTGAGAGAAGTTACAAACAATTTTTGCGATGAAAACATATTGGGGAAGGGAGGTTTCGGAACTGTATACAAAGGAGAATTGGACGATGGAACAAAGATTGCGGTTAAAAGGATGCAATCTGAAATGGTTGGTGACAAAGGGTTGGATGAGTTCAAATCTGAAATTGCGGTGCTTACTAAAGTTCGACACAGGCATTTGGTTGCACTCCACGGCTATTGCTTGGAGGACAATGAGAAACTTCTTGTGTATGAATACATGCCTCAGGGGACACTTAGTCAACATCTGTTTGACTGGAAAGATGACGGGTCAAAACCGCTTGAATGGAAGAGAAGGCTCTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACATCAAATTTTCATCCACAGGGATCTGAAACCATCAAATATCTTGCTTGGGGATGATATGCGCGCTAAAGTATCCGACTTTGGATTGGTTCGACTTGCTCCAGAAGGACAAGTCTCATTCCAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCAGAGTATGCAGTAACTGGACGAGTCACCACAAAGGTTGACATATACAGCTACGGCGTGATTCTTATGGAGATGATAACCGGAAGAAGAGCAATTGAGAACAGCCAACCAGAGGAGAACATCCACCTTGTTGCATGGTTTCGCAGGATGCTATTGAACAAAGACTCGTTCGATAAGGTCATTGATCCAGCACTGAATATCAACGAGGAAGGCTTGAAGAGTTTCTGGACTATTGCAGAATTGGCCAGCCAATGTTGTGCAAGAGAGCCTCATCATCGCCCCAACATGGGACACATAGTGAACGTGCTAGCACCTCTTGTCGAGATTTGGAAGCCGGCTGAACCTGATGCCGACGACATGTATGGGATTGACTTTGATATGAGTTTGCCTCAAGCACTAAGTAAGTGGCAGAATCTTGAAGGAATGAGCAACACACTCGATGTTTCATATTCTTCATCGATGGTTGATAGTTGTGAGAATACACAGTCAAGTATACCGCCTCGGTCTCCTGGATTTGCTAATTCCTTCACATCTACTGATGCACGATGA 2790 0.3993 MGFGVSYVLQLMVMFSLMFVCALSQDDVVMKKLKTTISKNNLDWSDKDFCNWKGVRCSGTKRVTTIELRSSTVEGSLPQELVQLTELNYFRCSGNSLSGNFPYMPNSLQKLYIDNNKFTSMPNDFFTNMSNLIEVAIDYNPFSQWQIPFSLKNCLALQTFSAVNVSFVGVIPEFFGEETFPSLTTLKLSFNSLEGNLPNSLSGSSIQTLWVNGQKSNNKLNGTLSILQNMTSLQQIWVHGNSFTGPIPDFSNLDQLYDVSLRDNQLTGVVPSSLSSLQSLKIVNLTNNDLQGSPPKFQDSVQVDIDIDKGRHSFCTEVVGQPCSQLVNVLLSVVEPFGYPLKIAQSWKGNDPCHGPNWLGIVCSSGGNIIIIDFENKGFSGSISPSFASLSSVTKLRLANNNLTGTIPKQLASMPVLQLLDVSNNSLYGQIPSFRAGVVVNTNGNPDIGKDKPHGSPDSSSGGEDKKKLGVGAIVGIVIGIVGLLGVGAFVFVIYGKRHNKRDNKVHTPNAIVVHPRNSGDGNAVKISVAASESVGASVAGGTGGFSLSSSVQNVEAGNMVISIQVLREVTNNFCDENILGKGGFGTVYKGELDDGTKIAVKRMQSEMVGDKGLDEFKSEIAVLTKVRHRHLVALHGYCLEDNEKLLVYEYMPQGTLSQHLFDWKDDGSKPLEWKRRLSIALDVARGVEYLHGLAHQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQVSFQTRLAGTFGYLAPEYAVTGRVTTKVDIYSYGVILMEMITGRRAIENSQPEENIHLVAWFRRMLLNKDSFDKVIDPALNINEEGLKSFWTIAELASQCCAREPHHRPNMGHIVNVLAPLVEIWKPAEPDADDMYGIDFDMSLPQALSKWQNLEGMSNTLDVSYSSSMVDSCENTQSSIPPRSPGFANSFTSTDAR* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2946 929 Gene3D Ribonuclease Inhibitor 25 321 IPR032675 -
Tpr1g2946 929 MobiDBLite consensus disorder prediction 444 464 - -
Tpr1g2946 929 SUPERFAMILY Protein kinase-like (PK-like) 562 879 IPR011009 -
Tpr1g2946 929 Pfam Protein kinase domain 577 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2946 929 Gene3D Ribonuclease Inhibitor 326 452 IPR032675 -
Tpr1g2946 929 Gene3D Transferase(Phosphotransferase) domain 1 652 865 - -
Tpr1g2946 929 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Tpr1g2946 929 PANTHER OSJNBA0070M12.3 PROTEIN 1 929 - -
Tpr1g2946 929 CDD STKc_IRAK 580 853 - -
Tpr1g2946 929 ProSiteProfiles Protein kinase domain profile. 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2946 929 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 929 - -
Tpr1g2946 929 SMART serkin_6 574 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2946 929 Pfam Leucine rich repeat N-terminal domain 42 58 IPR013210 -
Tpr1g2946 929 Pfam Leucine rich repeat N-terminal domain 332 364 IPR013210 -
Tpr1g2946 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 699 711 IPR008271 GO:0004672|GO:0006468
Tpr1g2946 929 MobiDBLite consensus disorder prediction 906 929 - -
Tpr1g2946 929 SUPERFAMILY L domain-like 36 432 - -
Tpr1g2946 929 Gene3D Phosphorylase Kinase; domain 1 545 651 - -
Tpr1g2946 929 SMART LRR_typ_2 390 414 IPR003591 -
Tpr1g2946 929 SMART LRR_typ_2 104 128 IPR003591 -
Tpr1g2946 929 SMART LRR_typ_2 277 299 IPR003591 -
Tpr1g2946 929 SMART LRR_typ_2 253 276 IPR003591 -
Tpr1g2946 929 SMART LRR_typ_2 180 204 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2946 Tpr-Chr1 33836123 33840059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2946 37 863 Receptor kinase-like Gene Family AT1G55610 28.463 8.44e-85 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Tpr1g2946 Pkinase 1.1e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2946 1 33836123 33840059 Tpr1g2946 1 33836123 33840059 ECH