Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2935 ATGATGATGATGACTCCGAATTTGAACCTTGAAGCTGAAAACAGTTTAGAAGTTAGCAGTCAAGTAGGTTCCAATGATCTTACAAAAGACAGTGCAACCACTTCTTCATGTCTTACAAATCTCACTAAGCCTGACATTAATCTAAGTTCTATTTCCCTCGACTTGACTCTTAACTTTGATCCGAGCGATGAAGATTTGAAGGAAACAAGTGACACTAACAGTGAAGTAGTAGGAGCTGATCATGCTCATAATACTACTACTTCAGCGACACCGGTTCATAGAGTTTTCTCTTGTAATTATTGTAAGAGGAAATTCTTTAGCTCACAAGCATTAGGTGGACATCAGAATGCTCATAAACGAGAGAGGACAATGGCAAAACGCGCTATGCGAATTGGAATGTTCACCGAAAGGTATACGAGCTTAGCTTCTTTACCTCTTCATGGTTCTTCTTCTTTTCATTCTCTTGGTATTCAAGCTCATTCTGCAATGCACCAACAATACATGCCATCGTCTTCGTTGTCAATGAGGGCTCATGAAATGAGAGCCACGGCAAAATTCGAGAAAGATTGTTTCGGAGGAGCTCCGATGTTTATGCATAATGATGATGTTGGTATATTTTGGCCTGGAAGTTTCAGGCAGATAGATCAAAGTGTTCATGTTCATAATCCAAATTTGAATACTAATTTTGTTGTAGCAACAGAACCTCCTCAACAAAAATCTACAGCTCCTGATCTCACTCTGAGGCTTTAA 750 0.3933 MMMMTPNLNLEAENSLEVSSQVGSNDLTKDSATTSSCLTNLTKPDINLSSISLDLTLNFDPSDEDLKETSDTNSEVVGADHAHNTTTSATPVHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRIGMFTERYTSLASLPLHGSSSFHSLGIQAHSAMHQQYMPSSSLSMRAHEMRATAKFEKDCFGGAPMFMHNDDVGIFWPGSFRQIDQSVHVHNPNLNTNFVVATEPPQQKSTAPDLTLRL* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2935 249 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Tpr1g2935 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Tpr1g2935 249 SUPERFAMILY beta-beta-alpha zinc fingers 94 124 IPR036236 -
Tpr1g2935 249 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g2935 249 Gene3D Classic Zinc Finger 70 142 - -
Tpr1g2935 249 PANTHER ZINC FINGER PROTEIN 3-RELATED 7 249 - -
Tpr1g2935 249 PANTHER ZINC FINGER PROTEIN JAGGED 7 249 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2935 Tpr-Chr1 33717509 33719723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2935 94 249 C2H2 Transcription Factor Family AT1G66140 44.809 5.95e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2935 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2935 1 33717509 33719723 Tpr1g2935 1 33717509 33719723 ECH