Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto7g0181 ATGTCGCATTCTGGGAAGCGCAATTCCGACCTAGGGTTCGATACTCTCAGCGATCAGTTTCGCCACATGCTGAGCTCTGACGAGAACAAGCCGGATTTTCGTGAGCTCAATTTTGGTTCGCCGGTATCGCCATTGCAGACTCGTCGGAGTGGTCCTTCTGCCACTGCGAGTGGGCAAACCACTACCAGTACTAGTTCCAGTTCATCTGGATCGGTTTCTGGGTCCAAACCGCCTGCGAACCGATCCGATAAAGGTCCCAAAGACCATTCCGGCGAGCTATCCGGTTCTAGCGAGAATAGTCCCACAGCTGCACGGAGCCTCCGATCTCCGACGAATGCTAGGACCTCAAAACCGGGTCAAGCGAAATCAGATTCGGGTCAGAGTTCACCTTCGAGCTCCTCTGCGAATTCACCGGCGTTGAATGTTCTCCCCGCCGGCAATATCTGTCCATCCGGAAAGATTCTGAAGACCGGTATGGCAACCAATCGGACCGCCAAGTCGGACGTTCTGGGCTACGGTACAGGGAATTACGGCCACGGAAACATAATGCGGGGCGGCGGAGCATCCAAACCTACCAGAGAGGGCGCTTTGAAAGAGCCGGCGAAGAAAACTGCGGCGGTGGCGAGGAGCTTGGATCCAGAAAAGTTAAAGAGAGTGGGAAACGAGCAGTATAGGAGTAGTAACTTTGCAGAGGCACTGAGTCTATACGATCGGGCAATTGCATTGTCTCCCGGTAATGCTGCCTACAGGAGCAACCGGGCGGCGGCGTTGACGGCTTTGGGTCGGTTGGATGAGGCGGTGAAGGAATGTGAGGAGGCAGTGAGGTTGGATACCAATTATGGAAGGGCCCATCAGCGTTTGGCGTCTCTATATCTCCGGTTAGGACAAATTGAGAATGCCAAGAAGCACTTCTTTTGTCACAGGCAACAGCCGGATCCTTCTGAGTTGCAGAAGTTGCAATCAGTGGAGAAGCAGATTAGCAAATGTACTATTTCTCGAAGGGCAGGTGAATGGAAAAGTGTCCTCAGGGAAATTGATGCTGCTGTTGATGCTGGAGCAGACTCTTCGCCTCAGCTCTTTATGTGTAGAGCAGAAGCCCTTTTGAAGCTCCACCAAATTGACGAAGCAGCATCAATTCTGTTAAATATTCCCAAAACCGAATCACTTCCGAAATCCTCTTTTCAGGAAAAGTTTTTTGGGATGCTTTCGGAAGCTTACTTCCTCTTTGTCGGAGCTCAGGTTGATATGGCTTTGGGAAGGTTTGAGAGTGCAGTTACAGTTGCTGAGAAAGCTAAACTCATTGATCCCCAGAGCACTGAAGTTGCTGTTCTGCTCACCAATATAAGGATAGTGGCTAGAGCTCGAGCACGTGGCAATGATCTTTTCAATTCTGAAAGGTTCACAGAAGCTTGCTCTGCATACGAGGAAGGTTTGAGGCGGGACCCAGCAAACTCGGTTCTCTATTGCAATAGAGCTGCTTGTTTTTTCAAACTTCGGCAATGGGATCGGGCAATTGAAGACTGCAATCGGGCTTTACAAATCCAACCAAATTACGCTAAAGCCCTTCTTCGAAGGGCTGCCTCATACAACAAGCTAGAAAAATGGGGAGAAGCAATTAAAGATTATGAGGTCCTGCGGAGAATGCTCCCAGATAACAATGACGTTTCTGAAGCTCTATTTCATGCACGAGTTGCTTTAAAGAAATCTCGTGGGGAAGAAGtatccaatttaaaatttggtgGTGAAGTGGAAGCCATATCTAGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATCTATTGTCTATTTTGCAATTGAATCTAACTCACAATGCAAGCAAATATCGCCATTTGTGAATACGCTTTGCATTCGCTATCCTTCTATTAGCTTCCTCAAGGTGGATATTCAAGAAAACCCAGCAGTTGCAACCGTTGAGGACATTAGCATCGTTCCAACTTTCAAGATCTACAAAAATAGCAATCGAGTGAAGGAACTTATCTGCCCTAGTCATGACCTGTTGGAACATTCTGTGAGGCATTACAGCCTTTAG 2058 0.4786 MSHSGKRNSDLGFDTLSDQFRHMLSSDENKPDFRELNFGSPVSPLQTRRSGPSATASGQTTTSTSSSSSGSVSGSKPPANRSDKGPKDHSGELSGSSENSPTAARSLRSPTNARTSKPGQAKSDSGQSSPSSSSANSPALNVLPAGNICPSGKILKTGMATNRTAKSDVLGYGTGNYGHGNIMRGGGASKPTREGALKEPAKKTAAVARSLDPEKLKRVGNEQYRSSNFAEALSLYDRAIALSPGNAAYRSNRAAALTALGRLDEAVKECEEAVRLDTNYGRAHQRLASLYLRLGQIENAKKHFFCHRQQPDPSELQKLQSVEKQISKCTISRRAGEWKSVLREIDAAVDAGADSSPQLFMCRAEALLKLHQIDEAASILLNIPKTESLPKSSFQEKFFGMLSEAYFLFVGAQVDMALGRFESAVTVAEKAKLIDPQSTEVAVLLTNIRIVARARARGNDLFNSERFTEACSAYEEGLRRDPANSVLYCNRAACFFKLRQWDRAIEDCNRALQIQPNYAKALLRRAASYNKLEKWGEAIKDYEVLRRMLPDNNDVSEALFHARVALKKSRGEEVSNLKFGGEVEAISSLEQFRAAISLPGVSIVYFAIESNSQCKQISPFVNTLCIRYPSISFLKVDIQENPAVATVEDISIVPTFKIYKNSNRVKELICPSHDLLEHSVRHYSL 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto7g0181 685 Pfam Tetratricopeptide repeat 282 304 IPR019734 GO:0005515
Sto7g0181 685 Pfam Thioredoxin 590 669 IPR013766 -
Sto7g0181 685 MobiDBLite consensus disorder prediction 40 78 - -
Sto7g0181 685 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Sto7g0181 685 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 15 683 IPR044534 -
Sto7g0181 685 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 15 683 - -
Sto7g0181 685 ProSiteProfiles TPR repeat profile. 213 246 IPR019734 GO:0005515
Sto7g0181 685 Gene3D Tetratricopeptide repeat domain 212 571 IPR011990 GO:0005515
Sto7g0181 685 SUPERFAMILY TPR-like 455 568 IPR011990 GO:0005515
Sto7g0181 685 Pfam Tetratricopeptide repeat 487 518 IPR001440 GO:0005515
Sto7g0181 685 MobiDBLite consensus disorder prediction 183 204 - -
Sto7g0181 685 MobiDBLite consensus disorder prediction 22 139 - -
Sto7g0181 685 Gene3D Glutaredoxin 577 684 - -
Sto7g0181 685 MobiDBLite consensus disorder prediction 92 139 - -
Sto7g0181 685 ProSiteProfiles TPR repeat profile. 519 552 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 247 280 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 281 314 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 405 438 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 451 484 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 485 518 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 519 552 IPR019734 GO:0005515
Sto7g0181 685 SMART tpr_5 213 246 IPR019734 GO:0005515
Sto7g0181 685 SUPERFAMILY TPR-like 213 440 IPR011990 GO:0005515
Sto7g0181 685 Pfam Tetratricopeptide repeat 220 277 - -
Sto7g0181 685 SUPERFAMILY Thioredoxin-like 586 669 IPR036249 -
Sto7g0181 685 CDD TRX_family 590 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto7g0181 Sto-Chr7 1351357 1354319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto7g0181 453 595 U-box Gene Family AT3G07370 28.333 3.04e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0181 7 1351357 1354319 Sto4g2794 4 28792558 28795827 CCT
Sto7g0181 7 1351357 1354319 Sto7g0181 7 1351357 1354319 ECH