Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0456 ATGGACGACGTGAAGGGTAAGCTAAAGGGTTTCATGAAGAAAGTCTCTCAATCGCCCTCTGGTAAATTCAAGGGCCAAGGAAGAGTCTTGGGATCGTCTTCAACTCCAACCCCGTCTTCCTCCGCATCTGCTAATTCCGTTCTTCTCCGCCCCACGCAGAATCCCGGTCCAAAACCTAGTCCTGCAGCGGCGACTTCTCGACCGGTTCCCCAGAAGAAGATCGATTCCGAGCCGAATAGGACGGAAGGGTCAAGTAAGTCCCATCCTGATCGCAAACCGGAAAATGGATTTGACCCGTTTGATTCTTTGATAACAACTGGGAAGAGGTCTCAAAATGGGTATTCATTGAATGTGTATGAATGTCCCATTTGTGGGCAGTCATTTAGGTCCGAAGAAGAGGTCTCTGAACATGTAGATAGCTGTTTGAGTAATCCAGTTGAGCGTGATGATGGAAATGATGTTGAAGAATTGCCTAACAATGAAGATGAGTCAAGAGGTGAATTGGAGGTTTGTATTGGTACTTACTTATCAGGGAAGCCATCTGAGGGTTCAGTTGAAGTTGTTCTCAAACTGTTGAGGAACATTGTGAAGGAACCAGAGAATGCAAAGTTTAGGAAAATTAGGTTGAGTAATCCAAAGATAAAGGAGGCTGTTGGTGAGGTTGCAGGGGGAATTGAGTTGTTGAGCTGTGTAGGATTTGAGCTAAAGGAGGAGAATGGGGAGACATGGGCGGTGATGGAAGTTCCTTTGGAGGAGCAAatgaaattgattaagaaaacaaTAGCATTACTGGAATTGCCGGCTCTACAGGAAACTCAAAAGAGAGACAATCTGGCATCTGGAACTTCTACTGAGATAGCTGAAAAGGCAGAACCTAAAAAGATTGACAGACAGGTAAAGGTCTTCTTTGCTGTACCCGAAAGCATCGCAGCTAAAATTGAGCTACCAGATTCTTTCTATAACCTTTCAATTGATGAGGTGAAAAGAGAAGCTGAGTTAAGGAGGAAAAAGATTGCAGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAACAAGCAAAAGCTGCCAAGAGGATATACAGAAAAACTATGATCCGGGTGCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACAGCCAATCTATATGAGTTCGTTAGCTCTGCATTAAAAGACCCGTGTTTAGAATTTGACTTGATGCATCCTGTGCTCGTTCAACGGCGAGTTATCCCTTGTTTTCCTGGAGCAGGGGAGAAAACTAGAACACTAGAGGAAGAGGACCTGGTACCTTCAGCTCTAATTAAGTTCAAACCTCATGAAACAGATTCTGTTGTTTACATAGGTCTTAAAAATGAATTGCTTGAAATTAGTGAACCACTCACGTGA 1407 0.4314 MDDVKGKLKGFMKKVSQSPSGKFKGQGRVLGSSSTPTPSSSASANSVLLRPTQNPGPKPSPAAATSRPVPQKKIDSEPNRTEGSSKSHPDRKPENGFDPFDSLITTGKRSQNGYSLNVYECPICGQSFRSEEEVSEHVDSCLSNPVERDDGNDVEELPNNEDESRGELEVCIGTYLSGKPSEGSVEVVLKLLRNIVKEPENAKFRKIRLSNPKIKEAVGEVAGGIELLSCVGFELKEENGETWAVMEVPLEEQMKLIKKTIALLELPALQETQKRDNLASGTSTEIAEKAEPKKIDRQVKVFFAVPESIAAKIELPDSFYNLSIDEVKREAELRRKKIADSQLLIPKSLKEKQAKAAKRIYRKTMIRVQFPDGVVLQGVFNPWEPTANLYEFVSSALKDPCLEFDLMHPVLVQRRVIPCFPGAGEKTRTLEEEDLVPSALIKFKPHETDSVVYIGLKNELLEISEPLT 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0456 468 MobiDBLite consensus disorder prediction 73 97 - -
Sto11g0456 468 CDD PUB 177 265 - -
Sto11g0456 468 Gene3D - 177 265 - -
Sto11g0456 468 SUPERFAMILY PUG domain-like 180 249 IPR036339 -
Sto11g0456 468 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 468 - -
Sto11g0456 468 MobiDBLite consensus disorder prediction 19 53 - -
Sto11g0456 468 SMART PGNneu 183 250 - -
Sto11g0456 468 Pfam UBX domain 362 409 IPR001012 GO:0005515
Sto11g0456 468 Gene3D Classic Zinc Finger 115 146 - -
Sto11g0456 468 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 149 IPR013087 -
Sto11g0456 468 MobiDBLite consensus disorder prediction 142 163 - -
Sto11g0456 468 SUPERFAMILY Ubiquitin-like 331 443 IPR029071 -
Sto11g0456 468 Gene3D - 354 446 - -
Sto11g0456 468 ProSiteProfiles Zinc finger CCHC NOA-type profile. 113 143 IPR034735 GO:0070530
Sto11g0456 468 SMART c2hc_5 118 142 IPR006642 GO:0003677|GO:0006281
Sto11g0456 468 ProSiteProfiles UBX domain profile. 364 443 IPR001012 GO:0005515
Sto11g0456 468 MobiDBLite consensus disorder prediction 1 108 - -
Sto11g0456 468 CDD UBX_UBXN6 364 444 - -
Sto11g0456 468 Pfam PUB domain 182 256 IPR018997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0456 Sto-Chr11 5784009 5791208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0456 1 391 C2H2 Transcription Factor Family AT2G01650 57.323 4.57e-151 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g0456 UBX 0.00019 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0456 11 5784009 5791208 Sto11g0456 11 5784009 5791208 ECH