Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0405 ATGGTTTCAAGATCTTACTCAAATCTATTGGACCTAGTCTCTGGCGAGTCTCCATCATCATTTGGGTTCATAAACCGTGGGATTCCCAGGATTATGACTGTGGCCGTGGAGAGTGTGAGCTCGGATCCCTCGTCGTCGGTCCACCGGGACCGGATCATAATTGTGGCGAACCAGCTCCCAATTAGGGCTCAGAGGAGGCCAgatggtagtagtAATTGGTCCTTCAATTGGGATGACAATTCACTTCTCCTCCAATTGAGAGATGGATTAGGTGATGATGATATTGAGGTTATCTATGTTGGGTGTCTTAAGGAAGAAATCCACCCAAATGAACAAGATGAGGTTTCACAAGTGCTCCTTGAGAGTTTCAAATGTGTCCCAACTTTTCTCCCACCTGAAATGTACACAAAATACTATCATGGGTTTTGCAAGCAGCAGCTATGGCCTTTGTTTCACTACATGCTGCCTTTGTCTCCTGACCTTGGTGGTAGGTTCAATAGGTCGCTATGGCAGGCGTACGTATCGGTGAATAAGATTTTCGCCGACCGGATTATGGAGGTGATCAACCCGGAAGACGATTATGTTTGGATACATGATTATCATCTCATGGTGTTGCCAACATTCTTGAGGAAGAGGTTCAACAGAGtgaaattggggtttttccTCCATAGTCCATTTCCTTCATCAGAAATCTACAAGACATTGCCTATTAGGGAAGAGCTGTTGAGAGCCCTTTTGAATTCTGATTTGATTGGGTTCCACACTTTTGATTATGCCCGGCATTTTCTATCGTGTTGTAGCCGGATGCTTGGTCTTACCTATGAATCGAAACGGGGTTATATCGGGCTCGAGTACTATGGTAGGACTGTTAGTATCAAAATTCTTCCTGTTGGCATACACATGGGTCAGCTTCAGTCAGTGTTGAGCCTTACTAAGACCGAAGAGAAAGTCGGCGAGCTCATTAGGCAATTTTCGGATCGGGGCAGGACAATGTTGCTCGGTGTGGATGACATGGACATTTTTAAGGGAATAAGTTTGAAGCTATTGGCAATGGAGCAGCTTCTCATTCAGCATCCAGAGTGTCAAGGGAAGGTTGTATTGGTCCAGATCGCTAACCCGGCTCGGGGGCGCGGGAAAGATGTGAAGGAAGTGCAAGCCGAGACGAAGGCGACGGTGAAGAGGATTAATGAAACATTTGGGAAACCTGGGTATGATCCTGTCATTCTGATTGAGGAGCCACTCAAGTTCTATGAGAAAGTTGCTTACTATGTTGTTGCTGAGTGTTGTCTAGTCACTGCAGTTAGGGATGGCATGAATCTCATACCGTACGAATACATAATAAGCCGTCAAGGAAACGAGAAATTGGACAAAGTCTTGGGACTGTCTTCCTCTCCTAAGAAAAGCATGTTGGTTGTGTCTGAATTTATAGGCTGTTCTCCATCTTTAAGCGGCGCAATCCGAGTTAACCCGTGGAATATCGATGCAGTAGCAGATGCAATGGACTCTGCCCTTGAAATGGCTGATTCAGAGAAGCAGCTTAGGCATGAGAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTACTGGGCTCGTAGCTTCTTGCAAGATTTGGGAAGGACTTGTAGTGATCATGTACGGCGAAGATGGTGGGGAATTGGATTTGGATTAAGTTTTAGAGTTGTAGCGCTCGATCCGAACTTCAGGAAGCTCTCGATGGAGCACATTGTTTCGGCTTACAAGCGGACAAAAACTCGGGCCATCCTTCTAGATTATGATGGCACACTCATGCCTCAGGCTTCAATCGATAAGAGCCCGACGAATAAATCTATTGAAATTCTAAATAGCTTGTGTAGAGACAAGAACAACATGGTGTTTCTCGTCAGCGCTAGAAGCCGGAAAACGCTTACCGAATGGTTCTCTTCTTGTGAGAATCTGGGAATCGCAGCCGAGCATGGTTACTTTCTGAGACTAAAGCGGGAAGCGGAGTGGGAAACGTGTGGACCTCCAACAGATTGCAGTTGGAAGCAGATTGCAGAGCCTGTGATGAAGCTTTATACCGAAACAACCGACGGATCCACCATCGAAGATAAAGAGACAGCCCTCGTGTGGTGCTACGAGGATGCGGATCCGGATTTCGGGTCCTGTCAAGCCAAGGAGCTTCTTGATCATCTTGAAAGTGTGCTTGCAAATGAACCTGTTACTGTCAAGAGTGGCCAGAATATTGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGACTTGTGGTGAAACGCCTACTTTCCACCATGCAAGAGAATGGAATATCGCCCGATTTCGTGTTGTGCATAGGGGATGACCGGTCGGACGAAGACATGTTCGAGGTAATCTCGAGTTCTATGGCCGGTCCGACCCTTGCGGCGAGGGCCGAAGTATTTGCATGCACCGTGGGCCGAAAACCAAGCAAGGCCAAGTACTATCTAGATGACACAGCAGAAATAGTAAGGTTGATGCAAGGCCTAGCTTGTGTTTCAGGACAAACAGTTCTATAG 2529 0.4607 MVSRSYSNLLDLVSGESPSSFGFINRGIPRIMTVAVESVSSDPSSSVHRDRIIIVANQLPIRAQRRPDGSSNWSFNWDDNSLLLQLRDGLGDDDIEVIYVGCLKEEIHPNEQDEVSQVLLESFKCVPTFLPPEMYTKYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLTKTEEKVGELIRQFSDRGRTMLLGVDDMDIFKGISLKLLAMEQLLIQHPECQGKVVLVQIANPARGRGKDVKEVQAETKATVKRINETFGKPGYDPVILIEEPLKFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGLSSSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLGRTCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTKTRAILLDYDGTLMPQASIDKSPTNKSIEILNSLCRDKNNMVFLVSARSRKTLTEWFSSCENLGIAAEHGYFLRLKREAEWETCGPPTDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVVKRLLSTMQENGISPDFVLCIGDDRSDEDMFEVISSSMAGPTLAARAEVFACTVGRKPSKAKYYLDDTAEIVRLMQGLACVSGQTVL 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0405 842 CDD HAD_TPP 587 828 - -
Sto11g0405 842 Pfam Glycosyltransferase family 20 51 538 IPR001830 GO:0003824|GO:0005992
Sto11g0405 842 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 840 IPR001830 GO:0003824|GO:0005992
Sto11g0405 842 TIGRFAM T6PP: trehalose-phosphatase 584 833 IPR003337 GO:0003824|GO:0005992
Sto11g0405 842 CDD GT20_TPS 51 538 IPR001830 GO:0003824|GO:0005992
Sto11g0405 842 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 840 - -
Sto11g0405 842 Pfam Trehalose-phosphatase 589 823 IPR003337 GO:0003824|GO:0005992
Sto11g0405 842 Gene3D Glycogen Phosphorylase B; 44 306 - -
Sto11g0405 842 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 50 541 - -
Sto11g0405 842 Gene3D - 718 841 IPR023214 -
Sto11g0405 842 Gene3D - 585 717 IPR023214 -
Sto11g0405 842 Gene3D Glycogen Phosphorylase B; 307 523 - -
Sto11g0405 842 SUPERFAMILY HAD-like 586 833 IPR036412 -
Sto11g0405 842 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 588 789 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0405 Sto-Chr11 5165717 5169307 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0405 1 839 Trehalose Biosynthesis Gene Families AT1G68020 81.935 0.0 1456
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0405 11 5165717 5169307 Sto11g0405 11 5165717 5169307 ECH