Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g0338 ATGATGACGCCGAACTTGAACTTGGAAGCCGAAAATCATTCAGATATGCAAGAAACTTCGCGTGATCTTACCAAGGACAGCACCACCACTTCTTCTTGTCTCACTAACCTCACAAAACCCGAACCTGATCCGGCCTCAATTTCCCTTGACTTGACACTCAATTTCAACTCTAGCGATGGCGGCGAGTTGAAGCGTCCGAGTGATGCTAGTAGTGAAGTGGGAGCCGAAGCTCAGGCTTCAGGATCGGCAATTCCTAGGGTTTTCTCTTGTAATTACTGTAGGAGGAAATTCTTCAGCTCGCAGGCATTGGGCGGCCATCAAAATGCTCATAAAAGGGAAAGGACAATGGCGAAGCGCGCGATGCGAATGGGGATGTTCACCGAAAGGTATACAAGCTTGGCTTCTCTTCCCCTTCATGGTTCTGCTTTTAGGTCTCTTGGTATTGAAGCTCATGCTGCTATGCACCAAAGACCTATGTCATCATCATCGTCGTCACTGAGGGCTCCGGATCTACGAGCCGGGGCTAAATTCGAGAAAGACTATTTCGGATCGCCGATGTTTGTTGAAGATGATGATAACGTGGGAATGTTTTGGCCCGGGAGTTTCCGGCAGGTGGATGTTGCGGGAGCCGGAGTTGGTTTCGGACATGAACCACAATCATCTACTTCTCCTGATCTCACTCTCAAGCTTTGA 693 0.4892 MMTPNLNLEAENHSDMQETSRDLTKDSTTTSSCLTNLTKPEPDPASISLDLTLNFNSSDGGELKRPSDASSEVGAEAQASGSAIPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSAFRSLGIEAHAAMHQRPMSSSSSSLRAPDLRAGAKFEKDYFGSPMFVEDDDNVGMFWPGSFRQVDVAGAGVGFGHEPQSSTSPDLTLKL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g0338 230 SUPERFAMILY beta-beta-alpha zinc fingers 86 116 IPR036236 -
Sto11g0338 230 MobiDBLite consensus disorder prediction 1 78 - -
Sto11g0338 230 PANTHER ZINC FINGER PROTEIN JAGGED 14 216 IPR045320 GO:0003700
Sto11g0338 230 MobiDBLite consensus disorder prediction 23 42 - -
Sto11g0338 230 MobiDBLite consensus disorder prediction 49 64 - -
Sto11g0338 230 Gene3D Classic Zinc Finger 76 135 - -
Sto11g0338 230 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Sto11g0338 230 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Sto11g0338 230 PANTHER ZINC FINGER PROTEIN 3-RELATED 14 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g0338 Sto-Chr11 4430070 4430867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g0338 86 230 C2H2 Transcription Factor Family AT1G66140 46.703 5.37e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto11g0338 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g0338 11 4430070 4430867 Sto11g0338 11 4430070 4430867 ECH