Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu9g1405 ATGACAATGGAAGAAGAGTCCTTGGCAGCAGTCCCATTTGACAGAGCTGTTGAACAGGCAATTGTATCTGTCAAGAAAGGTGCATATTTACTTAAGTGTGGTCGTAGAGGAAAACCAAAGCTCTGTCCCTTCAGACTTTCTCAGGATGAGAGAAATTTGATTTGGTACTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGTGCAGTTACAAAAATTGTTCAAGGGCAGGGAAATATAAGGTCCCAGAGGCAAAATGAACCCGAAAAGGAGTGCCATTCATTTTCACTAATCTATGCTAATGGTGAACGTTCTCTTGATCTGATATGCAAGGACAAAGTACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCTAGGTGTCAACATCCTAGAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCTGCTGGAAtcttaagaagaaagaaaaatcttgGCCTTCTGGATGATACCTCTCAGTTTACTCAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTTTCCGAAAGGTGCTTTTCTGATGGCTTGTCATGTACATCTGACAACTTATATTCATCGGCATCTTTCCTCTCCAGCTCTCATGGCATAACAGATAATTCAGTGCCAAGTTCTCCATACATTGATCCAGATATTCATAGCAACATTGAGTCAACACACGTTGACAAGGAGCGCAAAAAGAGTTTGTCCTATAGGTCTCTCATGCATCCTACCACCCCACATGTAGGAAAAAACAATGTATTGAAAGATATAATGATATGGGGTGGAGGGATTGGATGTCTTGTAGGGATAGTGAATGAAAGGTTTGTCCAACCTGGAGTTTATTCATTAGTGCCAAAGTTACTAGAATCCACTGCCATGTTAGATGTAAACAACATAGCTTTAGGAGGAAAACATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAGTGGGGAAGGCTGGGGCAGAAAATTGATATGGACATTAGCTCCCCCAAAATAGTTGATTCTCTTAATGGTATTCATGTAAAACATGTTGCCTGTGGTGAGTATCATACATGTGCTTTGACAGATTTTGGTGAAGTATATACTTGGGGGAATGATGTTTGTTGTGCAGATTTGTTTAATGAAGGGAGAACTAGAAGTCAGTGGATACCACAAAAACTTGGTGGACCCTTAGATGGCATTAGTATCTCAAGTGTTTCTTGTGGGGAATGGCATACTGCAATTGTCTCTAGGTGTGGGAGGTTATTTACCTATGGAGATGGTACATTTGGGGTTCTTGGCCATGGCGATCTTCGAAGCTGCTCTAGTCCAAAAGAAGTTGAATCTCTTAGTGGTCTAAGGGTGAGGTCAGTTGCTTGTGGATCATGGCATACAGCTGCTATTGTTGAAGTCATGTTTGACCGTTTTAGGTACAACAGTGCTAGTGGTAAGCTGTTTACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGAAGCAAGCTTGTGCCAACCTGTGTTACACAACTTGTTGACTATGATTTTGTTCAAGTGTCATGTGGAAGAATGTTGACTGTAGCACTTACCAACATGGGCAAGGTTTTTGCAATGGGAAGTGCCAAATATGGACAGCTAGGAAATCCACATGCCAGGGATAAAGTCGTCATGGTTGAAGGACAACTCAAACAAGAGTTTGTTAAAGTGATATCATCTGGTTCATATCATGTTGCTGTTTTGACTTCTGCAGGGAGTGTCTACACATGGGGCAAAGGTGAAAATGGCCAACTGGGGCTAGGTGATACTGAAGACAGATACACACCTTGCTTTGTTGAGGCTCTAAGAGACAGGCAGGTAGATACTATCACTTGTGGTCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATTAGTGACCAGTCAACTTGTAGTGGTTGTAGGTTACCATTTGGGTTCACAAGGAAGAAGCATAACTGTTATAACTGTGGTCTTTTGTTCTGCCGTGCTTGTAGTagtaaaaagattataaatgcACCTCTAGCCCCTAGTAAGAGCAAGGCTTTCCGGGTTTGCGATCAGTGCTTCAATAAACGGCAAGGAGGTACACAATCAGTAATGGCATCAAAGTCTAGAAATTACAACACTCAGCAGTTGCTGAAGCATCAGCACAAAATTGCTGATTTGACTGAAGATAGAGGAGAGACAACTGTGACACAAGGTCCTTTGTTGTCACTTGGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGTAAGGATTGGAAAAATCAACAAGAAAGCCAGCAGGATGTAGAAGATAGTTCTTCCATGCTAGGTGGAATGCCACAGTGGGGGCAAGTTCCATGCCCTGCCATATTTAAGATCAATTGTACAGAAAATTCAGTTGTGCATGTTTcttcatccaaaaataaattagccACAGTTTCTCCCCTTAATGTGGAATCTACAGCATATCATGTCCCCAATGCAGAGACAGATACAACAAAGTCTGACAAGATGCTCCTTGAAGAAGTTCAGAGGCTTAGAGCCGAGGCTAGGAGACTTGAAGAGCAGTGTGAGCTCAAGAACCATAAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTTTGTGGCGAGGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCACTAAGGCTTCATACAATTTCAGGAAAAGATCTTGCTGTACAAGAAGGAAAAGTCGGGCAGCATGAATTTGTGCCTAATGTGGCACCCATACATACAGATATGAAGAGTCCAAGAGATGGCAACGTGGACAGTCTATCCAATTCCCCTATAGTATTCTCCAACAcattaaaatccaaatttgGGAGAAGTTTGTTCCCCAAAAATGATAAAGTAATGGAGAATTCTAACTTAAATAGAGCAGAATCTCAACAAGACACCACTGAAGGCTTGAAGGTTGAATGGGTAGAACAGTTTGAGCCTGGTGTTTACATCACATTTACAACCTTGCCATGTGGGAAAAAGGGCCTCAAGCGAGTGAGATTTAGGTAA 3108 0.4144 MTMEEESLAAVPFDRAVEQAIVSVKKGAYLLKCGRRGKPKLCPFRLSQDERNLIWYSGQQEKHLRLSAVTKIVQGQGNIRSQRQNEPEKECHSFSLIYANGERSLDLICKDKVQAASWFVGLKAVISRCQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFTQVHSVCASPTLSLSERCFSDGLSCTSDNLYSSASFLSSSHGITDNSVPSSPYIDPDIHSNIESTHVDKERKKSLSYRSLMHPTTPHVGKNNVLKDIMIWGGGIGCLVGIVNERFVQPGVYSLVPKLLESTAMLDVNNIALGGKHAALVTKQGEVFCWGQGKWGRLGQKIDMDISSPKIVDSLNGIHVKHVACGEYHTCALTDFGEVYTWGNDVCCADLFNEGRTRSQWIPQKLGGPLDGISISSVSCGEWHTAIVSRCGRLFTYGDGTFGVLGHGDLRSCSSPKEVESLSGLRVRSVACGSWHTAAIVEVMFDRFRYNSASGKLFTWGDGDEGRLGHADNGSKLVPTCVTQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDKVVMVEGQLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRYTPCFVEALRDRQVDTITCGPSFTAAICLHKPISISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKIINAPLAPSKSKAFRVCDQCFNKRQGGTQSVMASKSRNYNTQQLLKHQHKIADLTEDRGETTVTQGPLLSLGQSCYRKSMPSGRKDWKNQQESQQDVEDSSSMLGGMPQWGQVPCPAIFKINCTENSVVHVSSSKNKLATVSPLNVESTAYHVPNAETDTTKSDKMLLEEVQRLRAEARRLEEQCELKNHKIQECQQKIEESWFVAREEAAKCKAAKEVIKALALRLHTISGKDLAVQEGKVGQHEFVPNVAPIHTDMKSPRDGNVDSLSNSPIVFSNTLKSKFGRSLFPKNDKVMENSNLNRAESQQDTTEGLKVEWVEQFEPGVYITFTTLPCGKKGLKRVRFR 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu9g1405 1035 SMART fyve_4 646 715 IPR000306 GO:0046872
Ssu9g1405 1035 ProSiteProfiles BRX domain profile. 1005 1035 IPR013591 -
Ssu9g1405 1035 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 596 647 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 432 446 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 534 552 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 375 391 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 416 432 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 325 341 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 591 612 IPR000408 -
Ssu9g1405 1035 PRINTS Chromosome condensation regulator RCC1 signature 306 319 IPR000408 -
Ssu9g1405 1035 Gene3D - 488 652 IPR009091 -
Ssu9g1405 1035 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 323 374 IPR000408 -
Ssu9g1405 1035 Pfam Regulator of chromosome condensation (RCC1) repeat 323 371 IPR000408 -
Ssu9g1405 1035 Pfam Regulator of chromosome condensation (RCC1) repeat 430 478 IPR000408 -
Ssu9g1405 1035 Pfam Regulator of chromosome condensation (RCC1) repeat 492 541 IPR000408 -
Ssu9g1405 1035 Pfam Regulator of chromosome condensation (RCC1) repeat 375 425 IPR000408 -
Ssu9g1405 1035 Pfam Regulator of chromosome condensation (RCC1) repeat 596 644 IPR000408 -
Ssu9g1405 1035 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 468 478 IPR000408 -
Ssu9g1405 1035 PANTHER F12P19.9 PROTEIN 16 1034 - -
Ssu9g1405 1035 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 545 595 IPR000408 -
Ssu9g1405 1035 Pfam Pleckstrin homology domain 19 124 IPR001849 -
Ssu9g1405 1035 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1034 - -
Ssu9g1405 1035 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 375 429 IPR000408 -
Ssu9g1405 1035 Gene3D - 388 483 IPR009091 -
Ssu9g1405 1035 Gene3D - 260 387 IPR009091 -
Ssu9g1405 1035 Pfam FYVE zinc finger 654 712 IPR000306 GO:0046872
Ssu9g1405 1035 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1034 IPR013591 -
Ssu9g1405 1035 Coils Coil 853 887 - -
Ssu9g1405 1035 SUPERFAMILY FYVE/PHD zinc finger 653 728 IPR011011 -
Ssu9g1405 1035 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 493 544 IPR000408 -
Ssu9g1405 1035 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 652 714 IPR017455 -
Ssu9g1405 1035 CDD PH_PLC_plant-like 15 127 - -
Ssu9g1405 1035 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 430 481 IPR000408 -
Ssu9g1405 1035 SUPERFAMILY PH domain-like 16 126 - -
Ssu9g1405 1035 SUPERFAMILY RCC1/BLIP-II 266 648 IPR009091 -
Ssu9g1405 1035 MobiDBLite consensus disorder prediction 768 791 - -
Ssu9g1405 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 653 725 IPR013083 -
Ssu9g1405 1035 Gene3D - 16 133 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu9g1405 Ssu-Chr9 48888487 48895352 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu9g1405 9 48888487 48895352 Ssu9g1405 9 48888487 48895352 ECH