Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3441 ATGGATCTTGGTTTGAAGATGAGGATCCTGAGGTACCACCCTCTGGCTTTGAAGTTACATGAGCAAGCAGGGAGCAAAAGAAAGTACACTTTCATTCAAGCACATAGGGCATGGCTTCTGAAGTTTTTGATGCTATGGATCCTTCTCATGGCTCTAATTGGTTGGTTCATCTATAATAAAATGGATGCTGACGCTAAAGTTAGAAGGAGAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGGTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCCGAGTATACTGCCAGGACAGCATTTGAACGGCCATTACTCAGCGGGGTGGCCTATGCCCAAAGAGTGATTAATTCGGAGAGGGAAACATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACAGGTTAGAGATGAGTATGCTCCGGTGATATTTGCACAAGAAACTTTGTCTTACCTTGAATCTCTTGATATGATGTCCGGGGAGGAGGACCAAGACAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTACTCACTAGTCCTTTTAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTATAAATCTAAGCTCCCTCCAAAGCCAACAATGGAAGAGCGCATTAAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTCGGTCAACTTGCTGGTAACCAAGCAATTTTGGTTAACGTATATGATATCACAAACTCTACTGACCACTTAATCATGTATGGCAACCAATACGAAGAAGGTGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGACCCATACAGGAAACATACAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACagcattcttattctttgtgattcttttattagtgggttatattttatatggtGCTGGAAATCATATTGTCAAAGTGGAGGATGATTTTCACGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCTGATATTGCCAAGTCACAGttTCTAGCTACTGTCTCTCACGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCAAAGCACCGAATTGAGTTCAACTCAACTTGATTATGCTCAGACTGCTCAAGCGTGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGATCTTCGATCCATACTTGATGAtgtcctttctcttttttctgaGAAGTCTCGGCAGAAAGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTGAAAGTCCATCTAGCTGAAAATAGAATGCCTACAATGAATGGGAAAGTTGAGACTTTTCTAAATGGAAGATCAGATGAAGTTGTGCATATGTCTGGTggttataatttcaaaactttaagtGGATATGAAGCAGCTGATGAGTGGAACAGCTGGGACAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTCTTCGATGTTTCTGTTAAAAAGGTGGCCAGTGAATCTAGTGAGCAAGTCACCCTGATGGTCAGTGTGGAGGACACTGGAGCTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGTTCAACCTCTCGACATTATGGTGGTACTGGCATTGGCTTGAGTATAAGTAAGTGCCTGGTTGAACTAATGGGTGGTGAGATAAGCTTCGTAAGCCGACCCCAGGTTGGAAGCACATTTTCATTTACTGCAGATTTTCGAAcgattaagaaaaattcaatGACTGACGTGAAGAAACATAATTTGGAAGATCTGCCTTCCAGTTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTGACCAGATACCATCTGAAGAGACTAGGGATACAGGCTAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCGGGATTATTTCAGCctgatattatttttgttgagaaagATACATGGGTTTCTGGAGAGGATGGGATCTTCAATGTGTGGCAACTGGACTGGAAACAGAATGGGCATATGTTTAAGATACCTCAAATGATCCTTCTTGCGACCGACATTAGTAATGCTGAATTTGATAAAGCTAAAGTTGCAGGTTTCAGTGATACCGTGATCATGAAGCCTCTGAGAGCTAGCATGGTTGCTGCTTGTCTTCAGCAAGTTCTGGGAATGGGGAAGAAGAGGCCTAAAGGTTCCACTTTAGTACGAAGCCTTCtttgtggaaaaaaaatcttagtggTTGATGACAATGTGGTAAACCGGAGGGTTGCTGCAGGggcattaaaaaaatttggagctGATGTGAAGTGTGCAGAAAGTGGCAAAACTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACTCGGCGAATTCGGATGATGGAGAGAAAGGCAAATGAGCAGCAGATGAATGATGAATGTGATGAAGGAAATGGCTGGAAAAACAAGTACCATACGCCTATATTGGCCATGACAGCTGATGTAATTCACTCGACAAACGAAGAGTGCTTGAGATGTGGGATGGACGGATATGTCTCAAAGCCTTTTGAGGAAGAGAAGCTGTATGAATCTCTTGCACGGTTTTTCAACCCCAATCCTACCTCAGATTCATTACAGAATGGCAGAGCTGGACAAGCAACTTAA 3030 0.4033 MDLGLKMRILRYHPLALKLHEQAGSKRKYTFIQAHRAWLLKFLMLWILLMALIGWFIYNKMDADAKVRRREVLGSLCDQRARMVQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVINSERETFEKQHGWVIKTMEREPSQVRDEYAPVIFAQETLSYLESLDMMSGEEDQDNILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNSTDHLIMYGNQYEEGDMSLVHESKLDFGDPYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLQSTELSSTQLDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRQKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRMPTMNGKVETFLNGRSDEVVHMSGGYNFKTLSGYEAADEWNSWDNFKHLIADEEFFFDVSVKKVASESSEQVTLMVSVEDTGAGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFVSRPQVGSTFSFTADFRTIKKNSMTDVKKHNLEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTSGLFQPDIIFVEKDTWVSGEDGIFNVWQLDWKQNGHMFKIPQMILLATDISNAEFDKAKVAGFSDTVIMKPLRASMVAACLQQVLGMGKKRPKGSTLVRSLLCGKKILVVDDNVVNRRVAAGALKKFGADVKCAESGKTALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRMMERKANEQQMNDECDEGNGWKNKYHTPILAMTADVIHSTNEECLRCGMDGYVSKPFEEEKLYESLARFFNPNPTSDSLQNGRAGQAT 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3441 1009 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Ssu5g3441 1009 Gene3D - 357 446 - -
Ssu5g3441 1009 Coils Coil 433 453 - -
Ssu5g3441 1009 ProSiteProfiles Histidine kinase domain profile. 390 679 IPR005467 -
Ssu5g3441 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 674 IPR036890 -
Ssu5g3441 1009 SMART HKATPase_4 495 679 IPR003594 -
Ssu5g3441 1009 Pfam CHASE domain 113 293 IPR006189 -
Ssu5g3441 1009 SMART CHASE_2 110 295 IPR006189 -
Ssu5g3441 1009 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Ssu5g3441 1009 CDD REC_hyHK_CKI1_RcsC-like 856 987 - -
Ssu5g3441 1009 SMART REC_2 854 987 IPR001789 GO:0000160
Ssu5g3441 1009 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Ssu5g3441 1009 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Ssu5g3441 1009 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Ssu5g3441 1009 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Ssu5g3441 1009 ProSiteProfiles Response regulatory domain profile. 855 991 IPR001789 GO:0000160
Ssu5g3441 1009 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Ssu5g3441 1009 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 994 - -
Ssu5g3441 1009 SUPERFAMILY CheY-like 700 835 IPR011006 -
Ssu5g3441 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 678 IPR003594 -
Ssu5g3441 1009 Gene3D - 447 683 IPR036890 -
Ssu5g3441 1009 Gene3D - 61 113 - -
Ssu5g3441 1009 SUPERFAMILY CheY-like 853 992 IPR011006 -
Ssu5g3441 1009 Pfam Response regulator receiver domain 856 924 IPR001789 GO:0000160
Ssu5g3441 1009 ProSiteProfiles Response regulatory domain profile. 704 834 IPR001789 GO:0000160
Ssu5g3441 1009 Gene3D CHASE domain 114 329 IPR042240 -
Ssu5g3441 1009 PANTHER HISTIDINE KINASE 4 24 994 - -
Ssu5g3441 1009 CDD HATPase_EvgS-ArcB-TorS-like 500 677 - -
Ssu5g3441 1009 Gene3D - 849 995 - -
Ssu5g3441 1009 Gene3D - 698 837 - -
Ssu5g3441 1009 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Ssu5g3441 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3441 Ssu-Chr5 84946820 84953164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3441 13 999 Histidine Kinase Gene Family AT2G01830 68.856 0.0 1376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu5g3441 HATPase_c 7.5e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3441 5 84946820 84953164 Ssu5g3441 5 84946820 84953164 ECH