Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3438 ATGTCTCTTCCACCCATAGAGTGTGTATACGTAACAGAGGACTGTGTTCGCGAATGGAGGAGTGGCAACCCTGCTCTCAAGGTTTCCCAACCCGTTCCAATGCTTCGCTTCCTCTACGAGCTCTGCTGGACTATGGTTCGGGGCGAATTGCCGTTTCAGAAGTGTAAAGTAGCGTTAGATTCGGTCATATTTTCAGATAAAGCTTCGAATGAGAAAATAGCTTCAAATTTTGCTGATATAGTGACCCAGATGGCTCAAGATCATACAATGTCAGGAGAGTTCCGTTCTCGTCTCATCAAACTGgCAAGATGGCTTGTGGAATCTGAAATGGTTCCAGTTAGGCTACTTCAAGAACGTTGTGAGGAAGAATTTTTGGGGGAGGCTGAGTTGATCAAAATCAAGGCTCAGGAGTTGAAGGGTAAAGAGGTCAGAGTTAATACTAGACTCCTCTATCAGCAAACCAAATTCAATCTTCTCAGAGAAGAGAGTGAGGGCTATGCAAAGCTGGTTACTCTTCTTTGTCGGGACTCTGAAGCATCTACTCAAAAAGCATCTGCTGCAACAATTGGCATTATTaagTCATTAATTGGCCATTTTGATTTGGATCCAAATCGTGTTTTTGATATTGTCCTTGAGTGTTTTGAACTGCAGCCTGATGATGATGTGTTTATAGAGTTGATTCCTATTTTTCCAAAGTCTCATGCTTCACAGATTCttggatttaaatttcaatattatcaGCGCATGGAAGTCAACAGTCCTGTTCCATTTGGGCTCTATAGACTCACAGCCTTACTGGTGAAGCAAGATTTTATTGATCTTGATAGCATATATGCTCATCTACTTCCCAAGGATGATGAGGCATTTGAGCATTACAATACTTTCTCTTCCAAGCGCCTTGATGAGGCTAATAAAATTGGAAGAATAAACCTTGCTGCGACTGGAAAAGATCTAATGGATGATGAGAAACAGGGGGATGTCACTATTGATCTCTTTGCTGCTTTAGACATGGAAAAAGATGCAATTGAAGAGCGAACAACTGAGCTTCAAAACAGTCAGACTTTGGGCTTGCTTACTGGCTTTCTTTCAGTGGATGACTGGTATCATGCACGTATTCTATTTGAACGcctttcaccactcaatgcagtggaacatattcaaatatgtgacaGTTTGTTTAGGCTTATCAAGAAGTCAATTTCTTCGGCATATGAGGTTATTCGTCAGACACATCTTCAAAATCCTGCATCATCCACAGGAGGCAGCGCTGATGTTATGGAGGTAGATAACTCTTCAGGACACGGTTCTTTCATAGATCTTCCAAAGGACCTTTTTCAGATGCTTGCTTGTACTGGACCTTATCTCTACCGTGATACTGTACTGCTGCAGAAGGTTTGTAGGGTGTTGAGAGGTTATTACCTTTCTGCTCTTGAGCTTGTAAGTCGTGGCGAAGGTGCCTTGGATCCTCAATTATATGTTCTTGGAAATCCTCACCTACATCTTAAGGAGGCAAGGCTAAGGGTGGAGGATGCTTTAGGAGCATGTCTACTACCTTCTCTGCAGTTAATTCCTGCCAATCCAGCTGTTGGTCAGGAAATTTGGGAACTAATGAGTCTCCTTCCTTATGAGGTGCGATATCGTTTGTATGGTGAGTGGGAAAAAGATGATGAGCGCATTCCTATGCTCTTATCTGCAAGACAAACTGCCAAGTTGGACACTAGACGTATTTTGAAACGGCTGGCAAAGGAAAATTTGAAGCAGCTGGGTCGGATGGTTGCAAAATTAGCTCATGCCAACCCCATGACTGTCCTTCGAACAATTGTTCATCAGATTGAGGCTTACAGAGACATGATTACTCCTGTAGTAGATGCATTTAAGTACTTGACTCAGCTTGAGTATGATATATTGGAATATGTTGTGATTGAGCGCTTGGTACTTGGAGGACGTGATAAGTTAAAGGATGATGGCCTTAATTTGTCAGACTGGCTTCAATCTCTAGCTTCATTTTGGGGCCACCTGTGTAAGAAGTACCCATCAATGGAATTACGGGGCCTTTTCCAGTATCTTGTGAACCAGTTAAAAAAGGGGCAGGGAATTGAGCTTGTTCTACTGCagGAGCTTATTCAACAAATGGCAAATGTCCAGTACACAGAGAACTTGACTGAGGAACAGCTGGATGCAATGGCAGGGAGTGAGACTCTCAGATATCATGCAACATCTTTTGGTGTAACTCGGAATAATAAGGCATTGATTAAGTCAACTAGCAGACTTAGAGATGCGTTACTTCCAAAAGATGAACCAAAGTTGGCGATCCCCCTGTTACTGCTTATTGCTCAACATTGTTCTCTGGTTGTCATCAATGCAGATGCCCCCTACATTAAAATGGTTAGCGAGCAGTTCGATAGATGTCATGGAACTCTCCTTCAGTATGTGGAATTTCTTTGCAGTGCAGTCACACCAGCATCAAATTATGCCATTCTTATTCCCTCCCTCAATGACCTGGTCCACCTTTACCACCTGGACCCTGAGGTTGCTTTCTTGATATATCGCCCTGTAATGAGACTTTTCAAGTCTCAGAGGAATCCTGATGTTTGCTGGCCCTTGGCTGATAAAAATGCTGCAAGTGATGCATCTGCAAGCTTTGAGTCTGATCCTTCAGATCATTCTAGTAGTATGGTTCTAAATCTTGGCTCTGCTCAGAATCCTATAAGTTGGTCATATCTTCTTGATACTGTTAAAACCATGTTGCCTTCAAAAGCATGGAATAGCCTATCTCCTGATCTTTATGCAACATTTTGGGGTCTTACATTATATGACCTGTATGTTCCAAAAAATCGTTACGAGTCGGAAATAGCCAAGCTGCATGCTAATCTTAAATCTTTGGAGGAGCTTTCTGACAATTCAAGCTCAGCAATCacaaagaggaagaaagaaaaggaaagaattcAAGAATCTCTTGATCGTCTGATTAGTGAACTGCATAAACATGAGGAGAATGTTGCATCTGTTAGGAGACGGCTTTCTCATGAAAAAGACAAATGGTTAAGTTCCTGTCCTGACACTTTGAAGATTAACATGGAGTTTCTTCAGCGTTGTATATTTCCACGCTGTACTTTCAGTATGCCAGATGCTGTTTATTGTGCTATGTTTGTACACACACTTCATTCCCTTGGAACCCCCTTTTTTAACACAGTCAACCACATAGATGTTCTGATATGCAAGACCCTTCAACCAATGATATGCTGTTGCACTGAGTATGAGGCAGGCAGGCTTGGCAGGTTTCTGTATGAGACTTTGAAGATTGCTTACTATTGGAAGagtGATGAATCTATTTATGAACGTGAGTGTGGAAACATGCCAGGCTTTGCCGTTTATTACAGATATCCTAATAGTCAGCGAGTTACATATGGGCAGTTCATTAAGGTGCACTGGAAGTGGAGTCAAAGAATCACACGTTTACTAATTCAGTGTCTGGAATCTAGCGAGTACATGGAAATTAGAAATGCTCTTATAATGTTGACAAAAATTTCTAGTGTTTTCCCTGTTACCCGGAAGAGTGGGATAAACCTTGAAAAGCGGGTAGCTAAGATTAAGAGTGATGAAAGAGAGGATCTTAAGGTGTTGGCAACTGGTGTTGCAGCAGCATTAGCTGCTAGGAAGCCTTCTTGGGTTACCGATGAAGAATTTGGTATGGGTTATCTTGAGTTGAAACCTGCACCATCTGTGACTAAATCTTCAGCTGGAAATTCAACAACTGTACAAAGTGGGATAAATCTGAATGTTTCACAAACTGAATCAGTCAGTGGAAAACATGTGGACTCTGGAAACACAGTCAAAGATCAGGTAATAAGAACAAAAACTGCAGATGGAAAGTCTGAAAGGACTGAAAGCATTACCGCGACAAAATCTGATTCTGGCCACATAAAACCCAAGAGTAGTTCAATGGTGAATGGATTGGATGCTCAATCATCCTTGGTCTCATCTTCTGTACAATCTGGGACGTCAAAATCTATGGAAAACCCAAAGCAAGTGGAAGAATCCATAAATAGAGCATCAGATGACCATGGGACAAGAACTGCTGAGTCAAGAACTTCGGCAAAACGTGCAGTGCCTGCTGGTTCACTTTCAAAGCCCTCAAAACAAGATCCTGTAAAAGAGGATGGTAGAGCTGGAAAACCTGTAGCTAGAACTTCTGGTTCGTCAAGCAGCGACAAGGATCTACAAACCCATGCATCAGAGGGAAGACACACCGGAACTACCAATGTATCTTCTTCAGTCAGTGCTAATGGTAACACCATTTCAGGTTCTACAAAAGGTTCAAATCCACCAGCAAAGATTTCATTGGAGGGTCCTGGTAATGAATCAAAGGCAGAGGTTGGAGTTGCCAAGTCTTCTGATATTAGGGCTTCTATGGTGAAGGATGATGGAAATGATACTATCGACTTCACAAGAGGATCCTCTTCTCGCATAGTTCATTCCCCTAGGTATGAAAACACAGGTGTTACTTCAAAGTCTAATGATAAAGTTCAGAAGAGAGCTGGTTCTGCTGAAGAACCAGACAGACTAGGAAAACGACGGAAAGGGGACGTGGAGCTAAGAGATTTTGAAAGTGAAGTTCGATTCTCTGAAAGAGATAAGCTGATGGATCCTCGATTTGCTGATGACAAATCAGGACCAGAGGAACATGGTCTGTACAGGGCAGGTGATAAGCCCTTGGAAAGGCCAAAAGACAAAGGCAACGAAAGATATGAAAGGGAACACAGGGAAAGATTGGACCGTCTGGATAAGTCTCGTGGCGATGACTTTGTTGCAGAAAAACCTAGGGATAGGTCAATTGAAAGATACGGAAGAGAACGATCTGTTGAGAGAATGCAAGAAAGGGGTAGTGAGAGGAGTTTTAATAGACTCCCTGAGAAAGCTAAAGATGAAAGAAGCAAGgatgatagaaataaattacGATACAATGATGCATCAGTAGAAAAATCTCATGCTGATGATCGCTTCCATGGACAAAGCTTGCCTCCGCCACCCCCTTTACCGCCTAATATGGTTCCTCAATCTGTGGGAGCTGGTAGGCGTGATGAAGATGCTGATAGGAGGTATGGAGCTACGAGGCACTCTCAAAGACTTTCTCCAAGGCATGAAGAAAAAGAACGGAGACGGTCTGAAGAGACTGTGGTTTCTCAGGATGATGCCAAACGCAGAAAAGAAGATGATTTTCGAGATCGAAAACGTGAGGAAATTAAGGTggaagagagggagagggaaaGAGAGAAAGCAAACATTCTGAAGGAAGACTTGGATTTAAATGCCGCATCCAAGAGACGTAAACTTAAGAGGGAACATCTACCAACTGGTGAACCTGGCGAGTACTCACCTGTGGCCCCTCCACCTCCTCCCCCTGGTATGGGTATGTCACTAGCGTATGATGGAAGGGACAGAGGAGACAGAAAGGGACCCATCATCCAGCATCCAAATTACATAGATGAACCAAGTCTCAGGATTCACGGTAAAGAGGGGGCCAGCAAGTTGAATCGTCGTGATTCTGATCCCTTGTATGAACGCGAATGGGATGATGAGAAGAGACCAAGAGCTGATCAAAAGCGAAGGCACCGGAAGTAA 5622 0.4185 MSLPPIECVYVTEDCVREWRSGNPALKVSQPVPMLRFLYELCWTMVRGELPFQKCKVALDSVIFSDKASNEKIASNFADIVTQMAQDHTMSGEFRSRLIKLARWLVESEMVPVRLLQERCEEEFLGEAELIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEASTQKASAATIGIIKSLIGHFDLDPNRVFDIVLECFELQPDDDVFIELIPIFPKSHASQILGFKFQYYQRMEVNSPVPFGLYRLTALLVKQDFIDLDSIYAHLLPKDDEAFEHYNTFSSKRLDEANKIGRINLAATGKDLMDDEKQGDVTIDLFAALDMEKDAIEERTTELQNSQTLGLLTGFLSVDDWYHARILFERLSPLNAVEHIQICDSLFRLIKKSISSAYEVIRQTHLQNPASSTGGSADVMEVDNSSGHGSFIDLPKDLFQMLACTGPYLYRDTVLLQKVCRVLRGYYLSALELVSRGEGALDPQLYVLGNPHLHLKEARLRVEDALGACLLPSLQLIPANPAVGQEIWELMSLLPYEVRYRLYGEWEKDDERIPMLLSARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVLGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTENLTEEQLDAMAGSETLRYHATSFGVTRNNKALIKSTSRLRDALLPKDEPKLAIPLLLLIAQHCSLVVINADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVTPASNYAILIPSLNDLVHLYHLDPEVAFLIYRPVMRLFKSQRNPDVCWPLADKNAASDASASFESDPSDHSSSMVLNLGSAQNPISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKSLEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVRRRLSHEKDKWLSSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAPSVTKSSAGNSTTVQSGINLNVSQTESVSGKHVDSGNTVKDQVIRTKTADGKSERTESITATKSDSGHIKPKSSSMVNGLDAQSSLVSSSVQSGTSKSMENPKQVEESINRASDDHGTRTAESRTSAKRAVPAGSLSKPSKQDPVKEDGRAGKPVARTSGSSSSDKDLQTHASEGRHTGTTNVSSSVSANGNTISGSTKGSNPPAKISLEGPGNESKAEVGVAKSSDIRASMVKDDGNDTIDFTRGSSSRIVHSPRYENTGVTSKSNDKVQKRAGSAEEPDRLGKRRKGDVELRDFESEVRFSERDKLMDPRFADDKSGPEEHGLYRAGDKPLERPKDKGNERYEREHRERLDRLDKSRGDDFVAEKPRDRSIERYGRERSVERMQERGSERSFNRLPEKAKDERSKDDRNKLRYNDASVEKSHADDRFHGQSLPPPPPLPPNMVPQSVGAGRRDEDADRRYGATRHSQRLSPRHEEKERRRSEETVVSQDDAKRRKEDDFRDRKREEIKVEEREREREKANILKEDLDLNAASKRRKLKREHLPTGEPGEYSPVAPPPPPPGMGMSLAYDGRDRGDRKGPIIQHPNYIDEPSLRIHGKEGASKLNRRDSDPLYEREWDDEKRPRADQKRRHRK 1873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3438 1873 Coils Coil 972 1013 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1790 1804 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1301 1345 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1395 1443 - -
Ssu5g3438 1873 Pfam THO complex subunit 2 N-terminus 37 416 IPR032302 -
Ssu5g3438 1873 Pfam THO complex subunit 2 N-terminus 445 590 IPR032302 -
Ssu5g3438 1873 PANTHER THO2 PROTEIN 11 1780 IPR040007 GO:0000347|GO:0006397|GO:0006406
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1284 1300 - -
Ssu5g3438 1873 Coils Coil 1741 1770 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1831 1865 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1510 1668 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1691 1786 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1264 1873 - -
Ssu5g3438 1873 Coils Coil 944 964 - -
Ssu5g3438 1873 Pfam Transcription factor/nuclear export subunit protein 2 921 1215 IPR021418 -
Ssu5g3438 1873 Pfam Transcription- and export-related complex subunit 592 667 IPR021726 -
Ssu5g3438 1873 PANTHER THO COMPLEX SUBUNIT 2 11 1780 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1346 1362 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1264 1283 - -
Ssu5g3438 1873 MobiDBLite consensus disorder prediction 1481 1509 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3438 5 84851967 84877439 Ssu5g3438 5 84851967 84877439 ECH