Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3434 ATGGGGGGGCAGAATCTTTCACCAAAGGAAAGGAGTAGAGATTGGATTGGAGTTCTTATGAACAGCAGCTTTGGTTATTGTGATTATCACCATGACCTTCGATCTAATGAGATGAATGTGTTCTGCGTAGACTGTGCACTTAGGATGTGTAGGCACTGCAAGGAAGCTCATTCCCTCCATAGAAGGTTTCAGATTTACAAATATTCCTATCAGGATGTCTTCCGCCATGCTGAGCTGCAGAAGTATTTTGATTGCTCAAAAATTCAGACTTACATATCCAATAATGAAAGGATTGTGCATCTCAAACCTCGGCCTTCAATCAACAAATCTAAATCTGCTGATCTAAGCCCTGAGTCTAAATCCAAAGAAACCGGCATATCAACAAGACCAAAGTCGGGTGGCACGTGTGAAGAATGTGGAAAACACTTGCAAGATGAGCGTAATCGCTTCTGCTCCATTACATGCAAGATCTCTGTGCTTCCAGTGGAGACCCAAAACCAAGGTCAAAATCAATGTTCACAAAACCAAAGTGCTAGAGGCATCATGACTCTAAAACCTGAAGGCATTGACTTCACAATGAATGATAACCATAATTCAGAACCGGAGTCATCTATCTCTGAAGCTGAGCCATATGGGTGGGTTGAAGTTGTGAACTTCAGAAAGCGCCCAAGGAAAAGTACCCCTCAGAGGCCTGTCTTTGTTTTCACGTCTTAG 714 0.4286 MGGQNLSPKERSRDWIGVLMNSSFGYCDYHHDLRSNEMNVFCVDCALRMCRHCKEAHSLHRRFQIYKYSYQDVFRHAELQKYFDCSKIQTYISNNERIVHLKPRPSINKSKSADLSPESKSKETGISTRPKSGGTCEECGKHLQDERNRFCSITCKISVLPVETQNQGQNQCSQNQSARGIMTLKPEGIDFTMNDNHNSEPESSISEAEPYGWVEVVNFRKRPRKSTPQRPVFVFTS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3434 237 ProSiteProfiles Zinc finger B-box type profile. 22 65 IPR000315 GO:0008270
Ssu5g3434 237 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 230 - -
Ssu5g3434 237 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 230 - -
Ssu5g3434 237 MobiDBLite consensus disorder prediction 102 137 - -
Ssu5g3434 237 MobiDBLite consensus disorder prediction 109 131 - -
Ssu5g3434 237 SMART bboxneu5 22 65 IPR000315 GO:0008270
Ssu5g3434 237 Pfam PLATZ transcription factor 67 157 IPR006734 -
Ssu5g3434 237 SUPERFAMILY B-box zinc-binding domain 17 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3434 Ssu-Chr5 84822921 84824756 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu5g3434 PLATZ 2.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3434 5 84822921 84824756 Ssu5g3434 5 84822921 84824756 ECH