Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3427 ATGGCTGGCACCGAACACAGACTAAGCTTGGAACCTGAGAAACAGGGCCTTCTCAACCACCACACCGAGAAGCACTTCACCGCTGGCGAAATCGTCCGCGATATCATCATCGGCGTTTCCGACGGCCTCACCGTCCCCTTCGCCCTCGCCGCCGGCCTCTCCGGCGCCAATGCCACCTCCTCCATTGTTCTCACCGCCGGCATAGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGTCTCGGCGGTTATTTGGCAGCAAAAAGTGAAGGCGATCATTATGCGAGAGAATTGAAAAGGGAGCAAGACGAAATCATCGCCGTGCCAGATACTGAAGCGGCAGAGGTAGCAGAAATACTGGCTCAGTATGGGATAGAGGCACATGAATATGCACCTGTGGTGAATGCTCTCAGAAAAAGGCCTCAAGCATGGCTTGATTTCATGATGAAGTTTGAGCTGGGACTAGAGAAGCCAGATCCAAGGAGGGCATTGCATAGTGCAATGACAATTGCCATTGCTTACATATTGGGTGGGGTTGTTCCTCTCCTTCCCTACATGTTCATTCCAAAGGCAGCAGAGGCAGTTGTGTTTTCAGTCGTGGTTACCTTGGTTGCATTGCTGATTTTTGGCTATGCCAAGGGACACTTCACTGGCAATAGACCTTTCAGGAGTGCTTTGGAAACTGCTCTAATTGGTGCCATGGCCTCTGCCGCTGCTTTTGGTATGGCAAAGGCTTTCCATCCATAG 744 0.5255 MAGTEHRLSLEPEKQGLLNHHTEKHFTAGEIVRDIIIGVSDGLTVPFALAAGLSGANATSSIVLTAGIAEVAAGAISMGLGGYLAAKSEGDHYARELKREQDEIIAVPDTEAAEVAEILAQYGIEAHEYAPVVNALRKRPQAWLDFMMKFELGLEKPDPRRALHSAMTIAIAYILGGVVPLLPYMFIPKAAEAVVFSVVVTLVALLIFGYAKGHFTGNRPFRSALETALIGAMASAAAFGMAKAFHP 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3427 247 Pfam VIT family 32 242 IPR008217 GO:0005384|GO:0030026
Ssu5g3427 247 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 10 245 IPR008217 GO:0005384|GO:0030026
Ssu5g3427 247 PANTHER VACUOLAR IRON TRANSPORTER 1.1-LIKE 10 245 - -
Ssu5g3427 247 CDD CCC1 11 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3427 Ssu-Chr5 84659607 84662998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3427 1 243 Nodulin-like Gene Family AT3G43660 25.306 2.66e-10 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3427 5 84659607 84662998 Ssu5g3427 5 84659607 84662998 ECH