Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3426 ATGGTGAAATCGAACGACAACGGTTCTGGTTTGGGTTCTGGTTCAGTGCCTCCTTTCTTAAAGAAATGTTACGAGATGGTGGAAGACCACAACACCGACTCCGTCATCCGTTGGAGCGACGGCGGTGACAGCTTTGTCATCTCCGACATCACGCAATTCTCCGTCACGCTCCTTCCCACCTATTTCAAACACAACAATTTCTCCAGCTTCATCAGGCAACTCAATATCTATGGTTTCAGGAAAATTGATACGGACTGCTGGGAATTTGCCAATGAGAACTTTGTTAGGGGTCAAAAgcatttgttgaaaaatatacGTAGAAGGAAGCATCCACACACTGCGGATCAGCCAAAAGCATTGCCACAGCAAGACAATTGTGACGAACCATCACAAGAAGCACAGAATCATTGCCTTTGGAAGGAAGTTGAGAATCTAAAATCTGATAAGAATTCGCTCACGCAGGAGTTGGTCATACTTAGGCAACACCAGGAATCTGCTGAGAATAAGTTGCTGCGCCTGAGTGATCGCATTCAAGGAATGGAAAAGCATCAGCAGCAGATGTTATCATTCTTAGTCATGGTTGTGCAAAGCCCAGGGTTCATGGTTCAGCTGCTTCAGCCTAAGGAAAATAATTGGCTTTTGGCTGAATCATGGAATATATTGGATCAAGATAAACAAGATGACAAGCCAGTTGCTTCTGATGGAATGATAATAAAGTATAAACCACCAGTAGGTGAAAAACTAAAGCCTGTAGTTCCACTATCTCCTGATTTCAATAAGCAGCCAGAACCTGAGCTTTCTGCAGATGGGCTAAAAGACTTGTGCATCAGTTCTGAATTCTTGAAAGTGCTTCTGGATGAAAAATTGACTCCATTAGAAAATCATTCTCCATTTCTCCTACCAGATTTACCCGATGACAGTTTGTGGGAACAGCTTTTTCTAGGTAGTCCTTTCCTGGGAAACATTCAAGAttctaataaagaaaatgagggGCACGCCGATAGTGGAATGGGGATGGAACCCACAATATCTAAGACTCCAAATGAAAATTCCCAAACTTTTGAATCGATGATTGTAGAAATGGAGAAAGCTCTCGAGTGA 1101 0.416 MVKSNDNGSGLGSGSVPPFLKKCYEMVEDHNTDSVIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHTADQPKALPQQDNCDEPSQEAQNHCLWKEVENLKSDKNSLTQELVILRQHQESAENKLLRLSDRIQGMEKHQQQMLSFLVMVVQSPGFMVQLLQPKENNWLLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPDFNKQPEPELSADGLKDLCISSEFLKVLLDEKLTPLENHSPFLLPDLPDDSLWEQLFLGSPFLGNIQDSNKENEGHADSGMGMEPTISKTPNENSQTFESMIVEMEKALE 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3426 366 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g3426 366 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g3426 366 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g3426 366 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g3426 366 Coils Coil 142 183 - -
Ssu5g3426 366 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g3426 366 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Ssu5g3426 366 MobiDBLite consensus disorder prediction 323 354 - -
Ssu5g3426 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 350 IPR027725 -
Ssu5g3426 366 MobiDBLite consensus disorder prediction 109 131 - -
Ssu5g3426 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 350 - -
Ssu5g3426 366 Gene3D - 12 109 IPR036388 -
Ssu5g3426 366 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3426 Ssu-Chr5 84651509 84653405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3426 1 317 HSF AT1G67970 49.221 1.93e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu5g3426 HSF_DNA-bind 1.5e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3426 5 84651509 84653405 Ssu5g3426 5 84651509 84653405 ECH