Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3419 ATGGCGATggcaaaagagaaagaggaagatgaAGAGGAGGTTCAGAACAGTGGGAAGAGGTTGAAATGCATGAGGAGTGAAGAAGAGGATGAAGTGGAAgcagaggaagaagaagagagtgaGCTTCCTTTAAAGCCAGGATTGTTCTTCTACCCAACAACCCCTACCTCCTTTGTTGTATCTGATGCTCTTGAACCCGATTTTCCCATCATATATGTCAACAAGGTCTTTGAAATCTCCACCGGCTATCGTGCCGACGAGGCTCTCGGTCGCAACTGTCGGTTCTTACAGTTTAGAGATCCTCAAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTCTGAATTTCAGAAAGGATGGTACTCCTTTGGTGAACAGACTGAGACTTAATCCAATTCATGATGATGATGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGTGTCTCATATCCAGTTTTCAAAGAGACTTGCAATCAAGATTTTGATAAGAATGGTAAATATTCTCCAAAGAGTGGACAATCATTGTACAGTCAGCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAGGTCTTGGCTCACAACATTTTGTCACGCTTGACACCAAGGGATGTTGCATCCATTGGCTCTGTATGCAGGAGGATCCGTCAATTAACAAAGAATGAGCATGTCAGAAAGATGGTATGTCAAAATGCGTGGGGCAAAGAAGTGACAGGCACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTTACCACTCTCGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGAGGTGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTTGTATTGTTTGGAGGTGAAGGAGTGGATATGCAACCTATGGATGACACTTTTGTTCTAAATCTCGATGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCGTCCCCACCCGGAAGATGGGGCCACACACTCTCATGCTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGGTGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTCTGTGGTGGAACCCCACCACTTCCTAGATCATGGCACAGCTCTTGCACAATTGAAGGATCCAAACTGGTTGTCTCCGGCGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATATTTACTGGACCTCACGACAGATAATCCAACATGGAGAGAAATTCCAACTTCGTGGGCTCCCCCTTCTCGGTTGGGGCACTCACTCTCAGTCTATGGGAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTATACAATTGATTTAGAAGATGAACAACCACAATGGAGGCAACTAGAATATAGCGCATTCACGGGATTAGCGAGTCAAAGTGCTGTTGTTCCTCCTCCTAGGCTGGATCATGTTGCTGTCAGCATGCCTTGTGGAAGGATCATTATATTTGGAGGTTCCATTGCTGGTCTTCACTCACCATCTCAGCTCTTTCTGTTGGACCCTTCTGAAGAGAAACCATCCTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGTTGGTGTTGGGTGGACACACTGGGGAGGAATGGATACTGAATGAGTTGCATGAGTTATGCTTGGCAAGTCGACAGGACTCTGACCTGTGA 1884 0.4565 MAMAKEKEEDEEEVQNSGKRLKCMRSEEEDEVEAEEEEESELPLKPGLFFYPTTPTSFVVSDALEPDFPIIYVNKVFEISTGYRADEALGRNCRFLQFRDPQAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLNPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQDFDKNGKYSPKSGQSLYSQHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3419 627 PANTHER ADAGIO PROTEIN 3 11 624 - -
Ssu5g3419 627 Coils Coil 7 38 - -
Ssu5g3419 627 Gene3D PAS domain 51 176 - -
Ssu5g3419 627 Pfam F-box domain 214 251 IPR001810 GO:0005515
Ssu5g3419 627 TIGRFAM sensory_box: PAS domain S-box protein 69 164 IPR000014 -
Ssu5g3419 627 MobiDBLite consensus disorder prediction 1 28 - -
Ssu5g3419 627 SUPERFAMILY Galactose oxidase, central domain 295 612 IPR011043 -
Ssu5g3419 627 Pfam Galactose oxidase, central domain 308 358 - -
Ssu5g3419 627 Gene3D - 366 490 IPR015915 GO:0005515
Ssu5g3419 627 Gene3D - 491 621 IPR015915 GO:0005515
Ssu5g3419 627 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 11 624 - -
Ssu5g3419 627 MobiDBLite consensus disorder prediction 1 41 - -
Ssu5g3419 627 CDD PAS 54 164 IPR000014 -
Ssu5g3419 627 Pfam Kelch motif 532 579 IPR011498 GO:0005515
Ssu5g3419 627 SUPERFAMILY F-box domain 208 282 IPR036047 GO:0005515
Ssu5g3419 627 Gene3D - 202 301 - -
Ssu5g3419 627 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 165 IPR035965 -
Ssu5g3419 627 Pfam Galactose oxidase, central domain 373 420 - -
Ssu5g3419 627 Pfam Galactose oxidase, central domain 422 473 - -
Ssu5g3419 627 Pfam PAS domain 64 164 IPR000014 -
Ssu5g3419 627 SMART pac_2 129 170 IPR001610 -
Ssu5g3419 627 ProSiteProfiles PAS repeat profile. 70 102 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3419 Ssu-Chr5 84544408 84547225 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3419 53 166 AGC Kinase Gene Family AT5G58140 43.860 1.70e-21 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3419 5 84544408 84547225 Ssu5g3419 5 84544408 84547225 ECH