Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3414 ATGTCGTCGCCAAACTCCGCCCCTCAGCCCCACGCGCCGCTTCTTCTCCCGCGCCCCGATGCCGCCCGCCTCCCCATCCTGGCGCTCCTCCTGGGACGCCGCGGCCGCTCCGCCATGGTCCGGGAGACGGCGGCGCGCGAGCTCGAGGAGCGCCGCGCCGACTGGACCTACTCGAAGCCAGTGGTGGCGCTGGACATGACGTGGAACATGGCCTTCCTCGTCGTCTCAGCGGTGATGCTCGCCTGCACCGCCAAGGAGAAGCCCAACACGCCGATCCGCTGGTGGATCTGCGGCTACGCGCTGCAGTGCCTCGTCCACGTGGCGCTCGTCTGGCTCGAGTACAGAAGGAGGAACGACGCGCCGATAAGGGACGAGGAATCTGGCGGTAACCTCGGATACGACGACGTCAACGACAGCGACGACGACGATGTTGGAACCTCCGGGAGTCCCTCTCCCACTGCATTCACAAAACAATGTGCATCATTGAATACCATGGTTTCGTTATTTTGGTGGATGGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATTCTTCTGCAAGATGCACCACATTTATACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTCGCTATCTTTTGTGTTGTTTTGGCATGCTTGATAGGAATCGCCCTCTGTTGTTGTTTGCCCTGTATTATTGCTATTCTCTATGCTGTTGCAGGACAGGAGGGTGCATCAGAATCGGATCTCAGTATACttccaaaatataaatttcaaatgttaAGCAATGAGGAAGCATCTGGTGAGGGAGGTGGATCAATGATTCCTATGGAGACCAGCAATGGTTACTTGGCAAATGAACGAACACTTTCACCTGAGGATGCAgAATGCTGTATATGCATATCTTCCTATGAGGATGGAGCTGAACTTCATGTTCTTCCTTGTAACCATCATTTCCATTCTACATGCATAGTGAAATGGTTAAGGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTCAAGGGAAATGAACAGGTGTGA 1035 0.5237 MSSPNSAPQPHAPLLLPRPDAARLPILALLLGRRGRSAMVRETAARELEERRADWTYSKPVVALDMTWNMAFLVVSAVMLACTAKEKPNTPIRWWICGYALQCLVHVALVWLEYRRRNDAPIRDEESGGNLGYDDVNDSDDDDVGTSGSPSPTAFTKQCASLNTMVSLFWWMVGFYWVVSGGDILLQDAPHLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASESDLSILPKYKFQMLSNEEASGEGGGSMIPMETSNGYLANERTLSPEDAECCICISSYEDGAELHVLPCNHHFHSTCIVKWLRMNATCPLCKYNILKGNEQV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3414 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Ssu5g3414 344 SUPERFAMILY RING/U-box 282 338 - -
Ssu5g3414 344 SMART ring_2 293 333 IPR001841 -
Ssu5g3414 344 Pfam Ring finger domain 292 334 IPR001841 -
Ssu5g3414 344 PANTHER TARGET OF ERK KINASE MPK-1 1 344 - -
Ssu5g3414 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 342 IPR013083 -
Ssu5g3414 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 344 - -
Ssu5g3414 344 CDD RING-H2_PA-TM-RING 292 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3414 Ssu-Chr5 84508037 84511035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3414 1 343 C3H Transcription Factor Family AT1G68070 65.714 1.50e-167 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3414 5 84508037 84511035 Ssu5g3414 5 84508037 84511035 ECH